|
| 37491319 | In vivo structure probing of RNA in <i>Archaea</i>: novel insights into the ribosome structure of <i>Methanosarcina acetivorans</i>. | RNA | 2023 |
| 35115361 | The universally conserved nucleotides of the small subunit ribosomal RNAs. | RNA | 2022 |
| 34108470 | R2DT is a framework for predicting and visualising RNA secondary structure using templates. | Nat Commun | 2021 |
| 32785681 | Supersized Ribosomal RNA Expansion Segments in Asgard Archaea. | Genome Biol Evol | 2020 |
| 27794554 | RNAcentral: a comprehensive database of non-coding RNA sequences. | Nucleic Acids Res | 2017 |
| 25352543 | RNAcentral: an international database of ncRNA sequences. | Nucleic Acids Res | 2015 |
| 26048960 | R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server. | Nucleic Acids Res | 2015 |
| 25780167 | rRNA--the evolution of that magic molecule. | RNA | 2015 |
| 24713659 | Ten lessons with Carl Woese about RNA and comparative analysis. | RNA Biol | 2014 |
| 24736617 | Introduction to special Carl Woese issue in RNA Biology. | RNA Biol | 2014 |
| 24691270 | Helix capping in RNA structure. | PLoS One | 2014 |
| 23291551 | Specificity between lactobacilli and hymenopteran hosts is the exception rather than the rule. | Appl Environ Microbiol | 2013 |
| 30157602 | You tell Carl that some of my best friends are Eukaryotes: Carl R. Woese (1928-2012). | RNA | 2013 |
| 24565058 | Two accurate sequence, structure, and phylogenetic template-based RNA alignment systems. | BMC Syst Biol | 2013 |
| 22693601 | A comparison of the crystal structures of eukaryotic and bacterial SSU ribosomal RNAs reveals common structural features in the hypervariable regions. | PLoS One | 2012 |
| 24772376 | An Accurate Scalable Template-based Alignment Algorithm. | Proceedings (IEEE Int Conf Bioinformatics Biomed) | 2012 |
| 22761677 | The fragmented mitochondrial ribosomal RNAs of Plasmodium falciparum. | PLoS One | 2012 |
| 22724009 | Structural constraints identified with covariation analysis in ribosomal RNA. | PLoS One | 2012 |
| 21625625 | Tensor decomposition reveals concurrent evolutionary convergences and divergences and correlations with structural motifs in ribosomal RNA. | PLoS One | 2011 |
| 24772454 | rCAD: A Novel Database Schema for the Comparative Analysis of RNA. | Proc IEEE Int Conf Escience | 2011 |
| 24772375 | R-PASS: A Fast Structure-based RNA Sequence Alignment Algorithm. | Proceedings (IEEE Int Conf Bioinformatics Biomed) | 2011 |
| 22983261 | RNA2DMap: A Visual Exploration Tool of the Information in RNA's Higher-Order Structure. | Proceedings (IEEE Int Conf Bioinformatics Biomed) | 2011 |
| 21889515 | Statistical potentials for hairpin and internal loops improve the accuracy of the predicted RNA structure. | J Mol Biol | 2011 |
| 20333466 | Placement of attine ant-associated Pseudonocardia in a global Pseudonocardia phylogeny (Pseudonocardiaceae, Actinomycetales): a test of two symbiont-association models. | Antonie Van Leeuwenhoek | 2010 |
| 20813041 | Fragmentation of the large subunit ribosomal RNA gene in oyster mitochondrial genomes. | BMC Genomics | 2010 |
| 20883011 | Coarse-grained model for simulation of RNA three-dimensional structures. | J Phys Chem B | 2010 |
| 19540243 | Correlation of RNA secondary structure statistics with thermodynamic stability and applications to folding. | J Mol Biol | 2009 |
| 20502534 | Covariant Evolutionary Event Analysis for Base Interaction Prediction Using a Relational Database Management System for RNA. | Sci Stat Database Manag | 2009 |
| 20224747 | The limits of nuclear encoded SSU rDNA for resolving the diatom phylogeny. | Eur J Phycol | 2009 |
| 19789725 | Monophyly of terrestrial adephagan beetles as indicated by three nuclear genes (Coleoptera: Carabidae and Trachypachidae). | Zool Scr | 2009 |
| 19457054 | Morphological, molecular, and phylogenetic characterization of Nosema ceranae, a microsporidian parasite isolated from the European honey bee, Apis mellifera. | J Eukaryot Microbiol | 2009 |
| 18430223 | The origin and evolution of the ribosome. | Biol Direct | 2008 |
| 18400176 | Structure of the mammalian 80S ribosome at 8.7 A resolution. | Structure | 2008 |
| 17921494 | Biclustering as a method for RNA local multiple sequence alignment. | Bioinformatics | 2007 |
| 16510155 | A structural model for the large subunit of the mammalian mitochondrial ribosome. | J Mol Biol | 2006 |
| 17069639 | Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements. | Insect Mol Biol | 2006 |
| 16828489 | The UAA/GAN internal loop motif: a new RNA structural element that forms a cross-strand AAA stack and long-range tertiary interactions. | J Mol Biol | 2006 |
| 16313563 | Assessing the odd secondary structural properties of nuclear small subunit ribosomal RNA sequences (18S) of the twisted-wing parasites (Insecta: Strepsiptera). | Insect Mol Biol | 2005 |
| 15373807 | A secondary structural model of the 28S rRNA expansion segments D2 and D3 from rootworms and related leaf beetles (Coleoptera: Chrysomelidae; Galerucinae). | Insect Mol Biol | 2004 |
| 15561141 | Diversity of base-pair conformations and their occurrence in rRNA structure and RNA structural motifs. | J Mol Biol | 2004 |
| 15296519 | Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction. | BMC Bioinformatics | 2004 |
| 12473452 | The lonepair triloop: a new motif in RNA structure. | J Mol Biol | 2003 |
| 13678681 | Phylogenetic relationships among 28 spirotrichous ciliates documented by rDNA. | Mol Phylogenet Evol | 2003 |
| 13678678 | ITS secondary structure derived from comparative analysis: implications for sequence alignment and phylogeny of the Asteraceae. | Mol Phylogenet Evol | 2003 |
| 12716459 | The exon context and distribution of Euascomycetes rRNA spliceosomal introns. | BMC Evol Biol | 2003 |
| 11869452 | The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. | BMC Bioinformatics | 2002 |
| 12144780 | Modeling a minimal ribosome based on comparative sequence analysis. | J Mol Biol | 2002 |
| 12368097 | Distribution of rRNA introns in the three-dimensional structure of the ribosome. | J Mol Biol | 2002 |
| 12127448 | The accuracy of ribosomal RNA comparative structure models. | Curr Opin Struct Biol | 2002 |
| 11504846 | A structural and phylogenetic analysis of the group IC1 introns in the order Bangiales (Rhodophyta). | Mol Biol Evol | 2001 |