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Author Details

Ramanathan Sowdhamini
Indian Institute of Science
1989
240
31
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37982321Interfacial residues in protein-protein complexes are in the eyes of the beholder.Proteins2024
36795614Bioinformatics Analysis of Mutations Sheds Light on the Evolution of Dengue NS1 Protein With Implications in the Identification of Potential Functional and Druggable Sites.Mol Biol Evol2023
37902388The alteration of structural network upon transient association between proteins studied using graph theory.Proteins2023
37828826Comparative analysis of permanent and transient domain-domain interactions in multi-domain proteins.Proteins2023
37288265Transcriptome data analysis of primary cardiomyopathies reveals perturbations in arachidonic acid metabolism.Front Cardiovasc Med2023
37187613A census of actin-associated proteins in humans.Front Cell Dev Biol2023
37101954Structural rationale to understand the effect of disease-associated mutations on Myotubularin.Curr Res Struct Biol2023
37330089Influence of pH on indole-dependent heterodimeric interactions between Anopheles gambiae odorant-binding proteins OBP1 and OBP4.Int J Biol Macromol2023
37065494Computational analysis of the flexibility in the disordered linker region connecting LIM domains in cysteine-glycine-rich protein.Front Genet2023
36911652Structural modelling and dynamics of full-length of TLR10 sheds light on possible modes of dimerization, ligand binding and mechanism of action.Curr Res Struct Biol2023
33292066Molecular and functional characterization of buffalo nasal epithelial odorant binding proteins and their structural insights by <i>in silico</i> and biochemical approaches.J Biomol Struct Dyn2022
35842574Computational analysis of potential candidate genes involved in the cold stress response of ten Rosaceae members.BMC Genomics2022
35411388PASS2.7: a database containing structure-based sequence alignments and associated features of protein domain superfamilies from SCOPe.Database (Oxford)2022
35523320DDX24 is required for muscle fiber organization and the suppression of wound-induced Wnt activity necessary for pole re-establishment during planarian regeneration.Dev Biol2022
35390447Development of candidate gene-based markers and map-based cloning of a dominant rust resistance gene in cultivated groundnut (Arachis hypogaea L.).Gene2022
36460949Transcriptome profiling of two Moringa species and insights into their antihyperglycemic activity.BMC Plant Biol2022
36250019Effects of a plant cyclotide on conformational dynamics and destabilization of β-amyloid fibrils through molecular dynamics simulations.Front Mol Biosci2022
35941189Exploring the medicinally important secondary metabolites landscape through the lens of transcriptome data in fenugreek (Trigonella foenum graecum L.).Sci Rep2022
36148593Structures of distantly related interacting protein homologs are less divergent than non-interacting homologs.FEBS Open Bio2022
36275618Computational tools to study RNA-protein complexes.Front Mol Biosci2022
36056415A genome-wide search of Toll/Interleukin-1 receptor (TIR) domain-containing adapter molecule (TICAM) and their evolutionary divergence from other TIR domain containing proteins.Biol Direct2022
36385157Integrative network analysis interweaves the missing links in cardiomyopathy diseasome.Sci Rep2022
35288646Author Correction: LIM domain-wide comprehensive virtual mutagenesis provides structural rationale for cardiomyopathy mutations in CSRP3.Sci Rep2022
35155583Editorial: Advances in Molecular Docking and Structure-Based Modelling.Front Mol Biosci2022
34999210Immune profile and responses of a novel dengue DNA vaccine encoding an EDIII-NS1 consensus design based on Indo-African sequences.Mol Ther2022
35241752LIM domain-wide comprehensive virtual mutagenesis provides structural rationale for cardiomyopathy mutations in CSRP3.Sci Rep2022
35230424DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins.Database (Oxford)2022
35134112Srinivasan (1962-2021) in Bioinformatics and beyond.Bioinformatics2022
33465132InsectOR-Webserver for sensitive identification of insect olfactory receptor genes from non-model genomes.PLoS One2021
33848580Genome-wide survey of tyrosine phosphatases in thirty mammalian genomes.Cell Signal2021
34733103Ligand Docking Methods to Recognize Allosteric Inhibitors for G-Protein-Coupled Receptors.Bioinform Biol Insights2021
34385981Antimicrobial Resistance Profiling and Phylogenetic Analysis of <i>Neisseria gonorrhoeae</i> Clinical Isolates From Kenya in a Resource-Limited Setting.Front Microbiol2021
34290496DEELIG: A Deep Learning Approach to Predict Protein-Ligand Binding Affinity.Bioinform Biol Insights2021
34048659Disulfide-Rich Cyclic Peptides from <i>Clitoria ternatea</i> Protect against β-Amyloid Toxicity and Oxidative Stress in Transgenic <i>Caenorhabditis elegans</i>.J Med Chem2021
31048014The transcriptome enables the identification of candidate genes behind medicinal value of Drumstick tree (Moringa oleifera).Genomics2020
33024710A knowledge-driven protocol for prediction of proteins of interest with an emphasis on biosynthetic pathways.MethodsX2020
32713863Computational search for potential COVID-19 drugs from FDAapproved drugs and small molecules of natural origin identifies several anti-virals and plant products.J Biosci2020
32728092Transcriptomic profiling of the medicinal plant Clitoria ternatea: identification of potential genes in cyclotide biosynthesis.Sci Rep2020
32218795Distinct Evolutionary Origins of Intron Retention Splicing Events in <i>NHX1</i> Antiporter Transcripts Relate to Sequence Specific Distinctions in <i>Oryza</i> Species.Front Plant Sci2020
32417458A glance into the evolution of template-free protein structure prediction methodologies.Biochimie2020
32309524Dataset for the combined transcriptome assembly of <i>M. oleifera</i> and functional annotation.Data Brief2020
30562539Decoding systems biology of plant stress for sustainable agriculture development and optimized food production.Prog Biophys Mol Biol2019
31847812Transcriptome analysis reveals plasticity in gene regulation due to environmental cues in Primula sikkimensis, a high altitude plant species.BMC Genomics2019
30219509Vaccination and immunization strategies to design Aedes aegypti salivary protein based subunit vaccine tackling Flavivirus infection.Int J Biol Macromol2019
31436855Specialized structural and functional roles of residues selectively conserved in subfamilies of the pleckstrin homology domain family.FEBS Open Bio2019
31233963Topology prediction of insect olfactory receptors.Curr Opin Struct Biol2019
31511507Molecular basis for metabolite channeling in a ring opening enzyme of the phenylacetate degradation pathway.Nat Commun2019
31249437Fold combinations in multi-domain proteins.Bioinformation2019
31007525Genome-Wide Search for Tyrosine Phosphatases in the Human Genome Through Computational Approaches Leads to the Discovery of Few New Domain Architectures.Evol Bioinform Online2019
30943284GenDiS database update with improved approach and features to recognize homologous sequences of protein domain superfamilies.Database (Oxford)2019
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Collaborators

Khader Shameer
School of Public Health, Imperial College London
Co-authored papers 22
Tom L Blundell
Heartand Lung Research Institute, University of Cambridge
Co-authored papers 12
Chandrasekaran Ramakrishnan
Indian Institute of Technology Madras
Co-authored papers 7
Mark S Johnson
Abo Akademi University
Co-authored papers 3
Kim D Pruitt
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 2
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European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
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Institute of Cardiovascular Science, University College London
Co-authored papers 2
Robert D Finn
European Bioinformatics Institute
Co-authored papers 2
Alex Bateman
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
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Genentech Inc.
Co-authored papers 2
Amos Bairoch
University of Geneva
Co-authored papers 2
Claire O'Donovan
European Bioinformatics Institute
Co-authored papers 2
Patricia C Babbitt
University of California san francisco
Co-authored papers 2
Zhan-yang Zhu
Stanford University
Co-authored papers 2
David F Burke
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Milton H Saier
University of California at San Diego
Co-authored papers 2
Ratna R Thangudu
Co-authored papers 2
Neil D Rawlings
Co-authored papers 2
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 1
Kevin P White
Co-authored papers 1
Peer Bork
University of Wurzburg
Co-authored papers 1
Brian K Shoichet
Department of Pharmaceutical Chemistry, University of California san francisco
Co-authored papers 1
??ke V??stermark
Uppsala University
Co-authored papers 1
Daniel H Haft
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 1
Deena M A Gendoo
Institute of Cancer and Genomic Sciences, University of Birmingham
Co-authored papers 1
Joel T Dudley
Institute for Next Generation Healthcare
Co-authored papers 1
Balasubramanian Lakshmi
Bharathidasan University, Indian Institute of Science
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Nagarajan Paramasivam
National Center for Tumor Diseases (NCT), German Cancer Research Center (DKFZ)
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Release 1.2