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Author Details

Alicia L Richards
University of Wisconsin-Madison
2011
37
24
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36959352Global detection of human variants and isoforms by deep proteome sequencing.Nat Biotechnol2023
37645943The microenvironment dictates glycocalyx construction and immune surveillance.Res Sq2023
37459363HIV-1 virological synapse formation enhances infection spread by dysregulating Aurora Kinase B.PLoS Pathog2023
37398395Deep learning from harmonized peptide libraries enables retention time prediction of diverse post translational modifications.bioRxiv2023
35234472Data-Independent Acquisition Protease-Multiplexing Enables Increased Proteome Sequence Coverage Across Multiple Fragmentation Modes.J Proteome Res2022
36116133Reduced endosomal microautophagy activity in aging associates with enhanced exocyst-mediated protein secretion.Aging Cell2022
35017099Comparative Analysis of T-Cell Spatial Proteomics and the Influence of HIV Expression.Mol Cell Proteomics2022
34942634Evolution of enhanced innate immune evasion by SARS-CoV-2.Nature2022
35332335Publisher Correction: Evolution of enhanced innate immune evasion by SARS-CoV-2.Nature2022
32402102An overview of biological applications and fundamentals of new inlet and vacuum ionization technologies.Rapid Commun Mass Spectrom2021
33729787CIDer: A Statistical Framework for Interpreting Differences in CID and HCD Fragmentation.J Proteome Res2021
34019840Adhesion-mediated mechanosignaling forces mitohormesis.Cell Metab2021
34127972Evolution of enhanced innate immune evasion by the SARS-CoV-2 B.1.1.7 UK variant.bioRxiv2021
34319755Toward Comprehensive Plasma Proteomics by Orthogonal Protease Digestion.J Proteome Res2021
33434350Mass spectrometry-based protein-protein interaction networks for the study of human diseases.Mol Syst Biol2021
33219668A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies.Nucleic Acids Res2021
32353859A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.Nature2020
32645325The Global Phosphorylation Landscape of SARS-CoV-2 Infection.Cell2020
29317520ATM directs DNA damage responses and proteostasis via genetically separable pathways.Sci Signal2018
28267253Identification of the phosphorylation targets of symbiotic receptor-like kinases using a high-throughput multiplexed assay for kinase specificity.Plant J2017
26998524Mitochondrial protein hyperacetylation in the failing heart.JCI Insight2016
27669165Mitochondrial protein functions elucidated by multi-omic mass spectrometry profiling.Nat Biotechnol2016
27748755A proteomic atlas of the legume Medicago truncatula and its nitrogen-fixing endosymbiont Sinorhizobium meliloti.Nat Biotechnol2016
25461719Proteome sequencing goes deep.Curr Opin Chem Biol2015
26193884The Negative Mode Proteome with Activated Ion Negative Electron Transfer Dissociation (AI-NETD).Mol Cell Proteomics2015
25863253SIRT3 mediates multi-tissue coupling for metabolic fuel switching.Cell Metab2015
25855955One-hour proteome analysis in yeast.Nat Protoc2015
24143002The one hour yeast proteome.Mol Cell Proteomics2014
23883414New ionization processes and applications for use in mass spectrometry.Crit Rev Biochem Mol Biol2013
24043425Neutron-encoded signatures enable product ion annotation from tandem mass spectra.Mol Cell Proteomics2013
22262808Localization and imaging of gangliosides in mouse brain tissue sections by laserspray ionization inlet.J Lipid Res2012
22895857Matrix assisted ionization: new aromatic and nonaromatic matrix compounds producing multiply charged lipid, peptide, and protein ions in the positive and negative mode observed directly from surfaces.J Am Soc Mass Spectrom2012
20855542Laserspray ionization, a new method for protein analysis directly from tissue at atmospheric pressure with ultrahigh mass resolution and electron transfer dissociation.Mol Cell Proteomics2011
21157869High-throughput analysis of peptides and proteins by laserspray ionization mass spectrometry.Rapid Commun Mass Spectrom2011
21337644Imaging mass spectrometry in transmission geometry.Rapid Commun Mass Spectrom2011
21678939Extending the laserspray ionization concept to produce highly charged ions at high vacuum on a time-of-flight mass analyzer.Anal Chem2011
22002701Inlet ionization: protein analyses from the solid state without the use of a voltage or a laser producing up to 67 charges on the 66 kDa BSA protein.Rapid Commun Mass Spectrom2011
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Collaborators

Danielle L Swaney
J. David Gladstone Institutes
Co-authored papers 12
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 9
Danish Memon
European Bioinformatics Institute
Co-authored papers 5
Pedro Beltrao
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 5
Mehdi Bouhaddou
J. David Gladstone Institutes
Co-authored papers 5
Adolfo Garc??a-Sastre
Icahn School of Medicine at Mount Sinai
Co-authored papers 5
Joseph B Hiatt
Fred Hutchinson Cancer Center
Co-authored papers 5
Margaret Soucheray
J. David Gladstone Institutes
Co-authored papers 5
Kirsten Obernier (CM4AI)
University of California San Francisco
Co-authored papers 5
Jyoti Batra
J. David Gladstone Institutes
Co-authored papers 5
Kevan M Shokat
University of California San Francisco
Co-authored papers 5
Hannes Braberg
University of California San Francisco
Co-authored papers 4
Natalia Jura
Cardiovascular Research Institute, University of California San Francisco
Co-authored papers 4
Kliment A Verba
University of California, University of California San Francisco
Co-authored papers 4
Kris M White
Quantitative Biosciences Institute (QBI) Coronavirus Research Group (QCRG)
Co-authored papers 4
Mahdad Noursadeghi
University College London
Co-authored papers 3
Ann-Kathrin Reuschl
University College London
Co-authored papers 3
Aminu S Jahun
University of Cambridge, Addenbrooke's Hospital Level 5
Co-authored papers 3
Clare Jolly
University College London
Co-authored papers 3
Manisha Ummadi
University of California, San Francisco
Co-authored papers 3
Lorena Zuliani-Alvarez
J. David Gladstone Institutes
Co-authored papers 3
Andrea Fossati
J. David Gladstone Institutes
Co-authored papers 3
Adrian Pelin
University of Ottawa
Co-authored papers 3
Greg J Towers
University College London
Co-authored papers 3
Matthew V X Whelan
University College London
Co-authored papers 3
Ian Goodfellow
University of Cambridge
Co-authored papers 3
Lucy Thorne
University College London
Co-authored papers 3
Jane Turner
University College London
Co-authored papers 3
Myra Hosmillo
University of Cambridge
Co-authored papers 3
Yiming Cai
Institute of Mental Health and Woodbridge Hospital
Co-authored papers 2
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