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Author Details

Tatsuhiko Tsunoda
The University of Tokyo
1984
340
94
PMIDPaper TitleJournal TitlePublished Year
36862552The early neutrophil-committed progenitors aberrantly differentiate into immunoregulatory monocytes during emergency myelopoiesis.Cell Rep2023
38016996PepCNN deep learning tool for predicting peptide binding residues in proteins using sequence, structural, and language model features.Sci Rep2023
37523217scDeepInsight: a supervised cell-type identification method for scRNA-seq data with deep learning.Brief Bioinform2023
37673922Time-dependent cell-state selection identifies transiently expressed genes regulating ILC2 activation.Commun Biol2023
37250307Topologically associating domain underlies tissue specific expression of long intergenic non-coding RNAs.iScience2023
36697832Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.Nature2023
36774402DeepInsight-3D architecture for anti-cancer drug response prediction with deep-learning on multi-omics.Sci Rep2023
36503892CNN-Pred: Prediction of single-stranded and double-stranded DNA-binding protein using convolutional neural networks.Gene2023
34585293Four pedigrees with aminoacyl-tRNA synthetase abnormalities.Neurol Sci2022
35551307Multi-ancestry genetic study of type 2 diabetes highlights the power of diverse populations for discovery and translation.Nat Genet2022
35666326Revisiting the definition of glioma recurrence based on a phylogenetic investigation of primary and re-emerging tumor samples: a case report.Brain Tumor Pathol2022
36480497Targeted deep sequencing analyses of long QT syndrome in a Japanese population.PLoS One2022
36002455Splicing QTL analysis focusing on coding sequences reveals mechanisms for disease susceptibility loci.Nat Commun2022
35945270Utility of tissue-specific gene expression scores for gene prioritization in Mendelian diseases.J Hum Genet2022
35128352Immune subtypes and neoantigen-related immune evasion in advanced colorectal cancer.iScience2022
34916088Hemorrhagic shock and encephalopathy syndrome in a patient with a de novo heterozygous variant in KIF1A.Brain Dev2022
35314433Unique characteristics of tertiary lymphoid structures in kidney clear cell carcinoma: prognostic outcome and comparison with bladder cancer.J Immunother Cancer2022
32946833Single-stranded and double-stranded DNA-binding protein prediction using HMM profiles.Anal Biochem2021
33514863A hypomorphic variant in EYS detected by genome-wide association study contributes toward retinitis pigmentosa.Commun Biol2021
33762331De novo ATP1A3 variants cause polymicrogyria.Sci Adv2021
33704598Homozygous ADCY5 mutation causes early-onset movement disorder with severe intellectual disability.Neurol Sci2021
33610832Deep Learning Approach for Automated Detection of Myopic Maculopathy and Pathologic Myopia in Fundus Images.Ophthalmol Retina2021
34611307Landscape of prognostic signatures and immunogenomics of the AXL/GAS6 axis in renal cell carcinoma.Br J Cancer2021
34545095Profiling the inhibitory receptors LAG-3, TIM-3, and TIGIT in renal cell carcinoma reveals malignancy.Nat Commun2021
34078274SPECTRA: a tool for enhanced brain wave signal recognition.BMC Bioinformatics2021
34074726Genotype-Structure-Phenotype Correlations of Disease-Associated IGF1R Variants and Similarities to Those of INSR Variants.Diabetes2021
34259900Multiplexed single-cell pathology reveals the association of CD8 T-cell heterogeneity with prognostic outcomes in renal cell carcinoma.Cancer Immunol Immunother2021
34112086Forecasting the spread of COVID-19 using LSTM network.BMC Bioinformatics2021
34368836DeepFeature: feature selection in nonimage data using convolutional neural network.Brief Bioinform2021
34226521Structural basis of ethnic-specific variants of PAX4 associated with type 2 diabetes.Hum Genome Var2021
33402466ELF3 Overexpression as Prognostic Biomarker for Recurrence of Stage II Colorectal Cancer.In Vivo2021
33106546Association of an IGHV3-66 gene variant with Kawasaki disease.J Hum Genet2021
33389592Effects of clovamide and its related compounds on the aggregations of amyloid polypeptides.J Nat Med2021
32294086Variants encoding a restricted carboxy-terminal domain of SLC12A2 cause hereditary hearing loss in humans.PLoS Genet2020
32070397Unveiling synapse pathology in spinal bulbar muscular atrophy by genome-wide transcriptome analysis of purified motor neurons derived from disease specific iPSCs.Mol Brain2020
33172501Prognosis prediction model for conversion from mild cognitive impairment to Alzheimer's disease created by integrative analysis of multi-omics data.Alzheimers Res Ther2020
33101677Integrative immunogenomic analysis of gastric cancer dictates novel immunological classification and the functional status of tumor-infiltrating cells.Clin Transl Immunology2020
32971154Clinical usefulness of multigene screening with phenotype-driven bioinformatics analysis for the diagnosis of patients with monogenic diabetes or severe insulin resistance.Diabetes Res Clin Pract2020
32298689Predicting protein-peptide binding sites with a deep convolutional neural network.J Theor Biol2020
29684165Navigating the disease landscape: knowledge representations for contextualizing molecular signatures.Brief Bioinform2019
31666070A comparison of machine learning classifiers for dementia with Lewy bodies using miRNA expression data.BMC Med Genomics2019
31856704Bigram-PGK: phosphoglycerylation prediction using the technique of bigram probabilities of position specific scoring matrix.BMC Mol Cell Biol2019
30202041Exploring predictive biomarkers from clinical genome-wide association studies via multidimensional hierarchical mixture models.Eur J Hum Genet2019
31388036DeepInsight: A methodology to transform a non-image data to an image for convolution neural network architecture.Sci Rep2019
31235800Brain wave classification using long short-term memory network based OPTICAL predictor.Sci Rep2019
31028281Author Correction: A missense mutation in the HECT domain of NEDD4L identified in a girl with periventricular nodular heterotopia, polymicrogyria, and cleft palate.J Hum Genet2019
30999862HseSUMO: Sumoylation site prediction using half-sphere exposures of amino acids residues.BMC Genomics2019
30820472Risk prediction models for dementia constructed by supervised principal component analysis using miRNA expression data.Commun Biol2019
30717652Discovering MoRFs by trisecting intrinsically disordered protein sequence into terminals and middle regions.BMC Bioinformatics2019
30324701OPAL+: Length-Specific MoRF Prediction in Intrinsically Disordered Protein Sequences.Proteomics2019
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Collaborators

Yusuke Nakamura
Japanese Foundation for Cancer Research
Co-authored papers 163
Michiaki Kubo
Co-authored papers 86
Atsushi Takahashi
Co-authored papers 64
Toshihiro Tanaka
Bioresourse Research Center, Tokyo Medical and Dental University (TMDU)
Co-authored papers 55
Hidewaki Nakagawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 26
Kenjiro Kosaki
Center for Medical Genetics, Keio University School of Medicine
Co-authored papers 25
Shiro Maeda
Co-authored papers 23
Akihiro Sekine
Graduate School of Medicine, Chiba University
Co-authored papers 21
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Co-authored papers 20
Akihiro Fujimoto
Graduate School of Medicine, The University of Tokyo
Co-authored papers 18
Takashi Morizono
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Yoichiro Kamatani
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Satoru Miyano
Tokyo Medical and Dental University
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Takahisa Kawaguchi
Center for Genomic Medicine, Kyoto University Graduate School of Medicine
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Yozo Ohnishi
RIKEN Center for Genomic Medicine
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Kohei Kaku
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Ryuzo Kawamori
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Takashi Kadowaki
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E-Shyong Tai
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Yutaka Negishi
Gifu Prefectural Tajimi Hospital
Co-authored papers 9
Yasushi Tanaka
Co-authored papers 9
David E Neal
University of Oxford, John Radcliffe Hospital
Co-authored papers 8
Toshimasa Yamauchi
Co-authored papers 8
Hiroshi Hirose
Co-authored papers 7
Nobuhiro Shojima
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Jer-Yuarn Wu
Co-authored papers 7
Norihiro Kato
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Hiroko Tanaka
Tokyo Medical and Dental University
Co-authored papers 7
Tien Yin Wong
Tsinghua University
Co-authored papers 7
Albert V Smith
University of Michigan School of Public Health ann arbor
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Release 1.2