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Author Details

Hagit Shatkay
University of Delaware
2000
54
20
PMIDPaper TitleJournal TitlePublished Year
37485423Enhancing biomedical search interfaces with images.Bioinform Adv2023
35923089Toward ECG-based analysis of hypertrophic cardiomyopathy: a novel ECG segmentation method for handling abnormalities.J Am Med Inform Assoc2022
35616099Translational drug-interaction corpus.Database (Oxford)2022
35757296Domain-Informed Neural Networks for Interaction Localization Within Astroparticle Experiments.Front Artif Intell2022
32779056Stochastic Sequential Modeling: Toward Improved Prostate Cancer Diagnosis Through Temporal-Ultrasound.Ann Biomed Eng2021
34453518Corrigendum to: Utilizing image and caption information for biomedical document classification.Bioinformatics2021
34252939Utilizing image and caption information for biomedical document classification.Bioinformatics2021
34169259Machine Learning Methods for Identifying Atrial Fibrillation Cases and Their Predictors in Patients With Hypertrophic Cardiomyopathy: The HCM-AF-Risk Model.CJC Open2021
32294192Integrating image caption information into biomedical document classification in support of biocuration.Database (Oxford)2020
31863452Translational Knowledge Discovery Between Drug Interactions and Pharmacogenetics.Clin Pharmacol Ther2020
32901381Correction to: Stochastic Sequential Modeling: Toward Improved Prostate Cancer Diagnosis Through Temporal-Ultrasound.Ann Biomed Eng2020
31032839An effective biomedical document classification scheme in support of biocuration: addressing class imbalance.Database (Oxford)2019
30952382Identifying Ventricular Arrhythmias and Their Predictors by Applying Machine Learning Methods to Electronic Health Records in Patients With Hypertrophic Cardiomyopathy (HCM-VAr-Risk Model).Am J Cardiol2019
30949681Figure and caption extraction from biomedical documents.Bioinformatics2019
29040394Compound image segmentation of published biomedical figures.Bioinformatics2018
30020552Reproductive phasiRNAs in grasses are compositionally distinct from other classes of small RNAs.New Phytol2018
29989922Stochastic Modeling of Temporal Enhanced Ultrasound: Impact of Temporal Properties on Prostate Cancer Characterization.IEEE Trans Biomed Eng2018
30537962Chronic Kidney Disease stratification using office visit records: Handling data imbalance via hierarchical meta-classification.BMC Med Inform Decis Mak2018
29655947Co-occurrence of medical conditions: Exposing patterns through probabilistic topic modeling of snomed codes.J Biomed Inform2018
28365740Effective biomedical document classification for identifying publications relevant to the mouse Gene Expression Database (GXD).Database (Oxford)2017
30637411Segmenting Compound Biomedical Figures into Their Constituent Panels.Exp IR Meets Multilinguality Multimodality Interact (2017)2017
27324076Corrigendum to "Text as data: Using text-based features for proteins representation and for computational prediction of their characteristics" [Methods 74 (2015) 54-64].Methods2016
25024289Summary of the BioLINK SIG 2013 meeting at ISMB/ECCB 2013.Bioinformatics2015
26072505Protein (multi-)location prediction: utilizing interdependencies via a generative model.Bioinformatics2015
25915962Utilizing ECG-Based Heartbeat Classification for Hypertrophic Cardiomyopathy Identification.IEEE Trans Nanobioscience2015
25448299Text as data: using text-based features for proteins representation and for computational prediction of their characteristics.Methods2015
24646119Protein (multi-)location prediction: using location inter-dependencies in a probabilistic framework.Algorithms Mol Biol2014
25737801Identifying Hypertrophic Cardiomyopathy Patients by Classifying Individual Heartbeats from 12-lead ECG Signals.Proceedings (IEEE Int Conf Bioinformatics Biomed)2014
23353650A large-scale evaluation of computational protein function prediction.Nat Methods2013
23514326Protein function prediction using text-based features extracted from the biomedical literature: the CAFA challenge.BMC Bioinformatics2013
22151823A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature.BMC Bioinformatics2011
22151929The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.BMC Bioinformatics2011
20865499Functionally informative tag SNP selection using a Pareto-optimal approach.Adv Exp Med Biol2010
19228803An integrative scoring system for ranking SNPs by their potential deleterious effects.Bioinformatics2009
19764776SherLoc2: a high-accuracy hybrid method for predicting subcellular localization of proteins.J Proteome Res2009
19461884How to get the most out of your curation effort.PLoS Comput Biol2009
17986460F-SNP: computationally predicted functional SNPs for disease association studies.Nucleic Acids Res2008
18718948Multi-dimensional classification of biomedical text: toward automated, practical provision of high-utility text to diverse users.Bioinformatics2008
18834498Text mining for biology--the way forward: opinions from leading scientists.Genome Biol2008
18999314Ranking single nucleotide polymorphisms by potential deleterious effects.AMIA Annu Symp Proc2008
18229719EpiLoc: a (working) text-based system for predicting protein subcellular location.Pac Symp Biocomput2008
17392328SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data.Bioinformatics2007
18693920Using cluster ensemble and validation to identify subtypes of pervasive developmental disorders.AMIA Annu Symp Proc2007
16543277Combining multi-species genomic data for microRNA identification using a Naive Bayes classifier.Bioinformatics2006
17094224Significantly improved prediction of subcellular localization by integrating text and protein sequence data.Pac Symp Biocomput2006
16873506Integrating image data into biomedical text categorization.Bioinformatics2006
16873474BNTagger: improved tagging SNP selection using Bayesian networks.Bioinformatics2006
16867190New directions in biomedical text annotation: definitions, guidelines and corpus construction.BMC Bioinformatics2006
16438716Discovering semantic features in the literature: a foundation for building functional associations.BMC Bioinformatics2006
16212771Hairpins in bookstacks: information retrieval from biomedical text.Brief Bioinform2005
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Collaborators

Phil H Lee
Center for Genomic Medicine, Massachusetts General Hospital
Co-authored papers 6
W John Wilbur
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 5
Martin Ringwald
Max-Planck-Institut fur Immunbiologie
Co-authored papers 5
Cecilia N Arighi
University of Delaware
Co-authored papers 4
Judith A Blake
Co-authored papers 4
Oliver Kohlbacher
Max Planck Institute for Developmental Biology
Co-authored papers 4
Madeleine Moussa
Schulich School of Medicine and Dentistry, University of Western Ontario
Co-authored papers 3
Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 3
Lynette Hirschman
The MITRE Corporation
Co-authored papers 2
Claudine Jurkovitz
Christiana Care Health Services Inc.
Co-authored papers 2
Shibu Yooseph
University of Central Florida
Co-authored papers 2
Martin Krallinger
Spanish National Cancer Research Centre
Co-authored papers 2
Daniela Raciti
California Institute of Technology
Co-authored papers 2
Cynthia L Smith
Skirball Institute for Biomolecular Medicine, New York University Medical School
Co-authored papers 2
Christian Blaschke
University of Otago
Co-authored papers 2
Karin Verspoor
National Centre for Infections in Cancer, 5Peter MacCallum Cancer Centre
Co-authored papers 2
Clark Mobarry
Co-authored papers 2
Lang Li
College of Medicine, The Ohio State University
Co-authored papers 2
Bixiong Chris Shue
Co-authored papers 1
Pekka Koskinen
University of Helsinki and Helsinki University Hospital
Co-authored papers 1
Domenico Cozzetto
Imperial College London
Co-authored papers 1
Florian Leitner
Co-authored papers 1
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 1
Louise C Showe
The Wistar Institute
Co-authored papers 1
Yuanpeng Zhou
Fudan University
Co-authored papers 1
Karin A Remington
The J. Craig Venter Institute.
Co-authored papers 1
Rita Casadio
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 1
Olivier Lichtarge
Baylor College of Medicine
Co-authored papers 1
Dietrich Rebholz-Schuhmann
University of Cologne
Co-authored papers 1
Livia Perfetto
Department of Biology and Biotechnologies "Charles Darwin", La Sapienza University
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Release 1.2