Author details

Full Name

Jessica Severin

Affiliation

Center for Integrative Medical Sciences

ORCID

Career Start Year

1996

Papers

H Index

Expertise

CM4AI Collaborator

Christopher Churas (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37608799	ZENBU-Reports: a graphical web-portal builder for interactive visualization and dissemination of genome-scale data.	NAR Genom Bioinform	2023
35882231	Recombination of repeat elements generates somatic complexity in human genomes.	Cell	2022
36577377	Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.	Cell Rep	2022
34078885	Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.	Nat Commun	2021
35121960	Combined inhibition of XIAP and BCL2 drives maximal therapeutic efficacy in genetically diverse aggressive acute myeloid leukemia.	Nat Cancer	2021
32718981	Comparative transcriptomics of primary cells in vertebrates.	Genome Res	2020
32719792	The Transcriptional Network That Controls Growth Arrest and Macrophage Differentiation in the Human Myeloid Leukemia Cell Line THP-1.	Front Cell Dev Biol	2020
30407557	Update of the FANTOM web resource: expansion to provide additional transcriptome atlases.	Nucleic Acids Res	2019
30664627	C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.	Nat Commun	2019
30538238	Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system.	Sci Data	2018
27794045	Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.	Nucleic Acids Res	2017
28241135	An atlas of human long non-coding RNAs with accurate 5' ends.	Nature	2017
29087374	Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system.	Sci Data	2017
29182598	Monitoring transcription initiation activities in rat and dog.	Sci Data	2017
28972578	Linking FANTOM5 CAGE peaks to annotations with CAGEscan.	Sci Data	2017
28829439	An integrated expression atlas of miRNAs and their promoters in human and mouse.	Nat Biotechnol	2017
28850106	FANTOM5 CAGE profiles of human and mouse samples.	Sci Data	2017
28850105	FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies.	Sci Data	2017
25723102	Gateways to the FANTOM5 promoter level mammalian expression atlas.	Genome Biol	2015
26635867	Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line.	Front Genet	2015
25678556	Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.	Science	2015
25717144	Technical Advance: Transcription factor, promoter, and enhancer utilization in human myeloid cells.	J Leukoc Biol	2015
24727769	Interactive visualization and analysis of large-scale sequencing datasets using ZENBU.	Nat Biotechnol	2014
24670764	A promoter-level mammalian expression atlas.	Nature	2014
24703491	Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions.	Mol Genet Metab	2014
22194471	Promoter architecture of mouse olfactory receptor genes.	Genome Res	2012
22428058	Reconstruction of monocyte transcriptional regulatory network accompanies monocytic functions in human fibroblasts.	PLoS One	2012
21075797	Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.	Nucleic Acids Res	2011
21806842	The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.	J Biomed Semantics	2011
21677750	A conditional knockout resource for the genome-wide study of mouse gene function.	Nature	2011
20459813	eHive: an artificial intelligence workflow system for genomic analysis.	BMC Bioinformatics	2010
20543846	Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.	Nat Methods	2010
19029536	EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates.	Genome Res	2009
19377474	The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.	Nat Genet	2009
19374775	The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.	Genome Biol	2009
19374773	FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions.	Genome Biol	2009
17148474	Ensembl 2007.	Nucleic Acids Res	2007
16381931	Ensembl 2006.	Nucleic Acids Res	2006
15608235	Ensembl 2005.	Nucleic Acids Res	2005
15516592	Single-molecule approach to bacterial genomic comparisons via optical mapping.	J Bacteriol	2004
15500921	Shotgun optical mapping of the entire Leishmania major Friedlin genome.	Mol Biochem Parasitol	2004
12952882	Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly.	Genome Res	2003
12450857	A whole-genome shotgun optical map of Yersinia pestis strain KIM.	Appl Environ Microbiol	2002
9647639	A software system for data analysis in automated DNA sequencing.	Genome Res	1998
9064194	Behavioral and social correlates of escape from suppression of ovulation in female common marmosets housed with the natal family.	Am J Primatol	1997
9071400	Escape from social suppression of sexual behavior and of ovulation in female common marmosets.	Ann N Y Acad Sci	1997
8654991	M13-102: a vector for facilitating construction and improving quality of M13 shotgun libraries.	Gene	1996
8832184	Automatic matrix determination in four dye fluorescence-based DNA sequencing.	Electrophoresis	1996

1 - 48 of 48

Marta Gut

Universitat de Barcelona (UB)

Career Start Year 2010

Number of shared co-authors 5

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 0

James Taylor

Johns Hopkins University

Career Start Year 2004

Number of shared co-authors 32

Sarath Chandra Janga

Indiana University

Career Start Year 2004

Number of shared co-authors 2

Manolis Kellis

Massachusetts Institute of Technology

Career Start Year 2003

Number of shared co-authors 15

Jeong-Hyeon Choi

National Marine Biodiversity Institute of Korea

Career Start Year 2000

Number of shared co-authors 2

Josep F Abril

University of Barcelona

Career Start Year 2000

Number of shared co-authors 20

Ana Conesa

Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)

Career Start Year 2000

Number of shared co-authors 10

Elia Stupka

Center for Omics Sciences, IRCCS San Raffaele Scientific Institute

Career Start Year 2000

Number of shared co-authors 78

Karsten Hokamp

Smurfit Institute of Genetics, Trinity College of Dublin

Career Start Year 1999

Number of shared co-authors 7

Sarah J Wheelan

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1998

Number of shared co-authors 8

David R Powell

Biomedicine Discovery Institute, Monash University

Career Start Year 1998

Number of shared co-authors 5

Mark D Robinson

University of Zurich

Career Start Year 1997

Number of shared co-authors 0

Panayiotis V Benos

University of Florida

Career Start Year 1996

Number of shared co-authors 2

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 0

Wolfgang Huber

Technische Universitat Munchen

Career Start Year 1995

Number of shared co-authors 10

Steven J M Jones

University of British Columbia

Career Start Year 1995

Number of shared co-authors 17

Sheng Zhong

Peking-Tsinghua Center for Life Sciences, College of Life Sciences, Peking University

Career Start Year 1994

Number of shared co-authors 5

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 13

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 37

Bianca Habermann

Aix Marseille University, CNRS, Turing Center for Living Systems

Career Start Year 1993

Number of shared co-authors 2

Jill P Mesirov

University of California San Diego

Career Start Year 1992

Number of shared co-authors 15

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 5

Emmanuel Barillot

Institut Curie, Universite PSL

Career Start Year 1991

Number of shared co-authors 5

Wing Hung Wong

Stanford University

Career Start Year 1991

Number of shared co-authors 0

Roderic Guig??

Barcelona Institute of Science and Technology

Career Start Year 1990

Number of shared co-authors 39

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 25

Michael Snyder

Stanford University

Career Start Year 1981

Number of shared co-authors 24

Christian J Stoeckert

Perelman School of Medicine, University of Pennsylvania

Career Start Year 1980

Number of shared co-authors 9

Joaqu??n Dopazo

Andalusian Public Foundation Progress and Health-FPS

Career Start Year 1977

Number of shared co-authors 9

row(s) 1 - 30 of 30

Piero Carninci

RIKEN Center for Integrative Medical Sciences

Co-authored papers 24

Yoshihide Hayashizaki

Center for Integrative Medical Sciences

Co-authored papers 24

Hideya Kawaji

RIKEN Center for Integrative Medical Sciences

Co-authored papers 22

Alistair R R Forrest

RIKEN Center for Integrative Medical Sciences

Co-authored papers 20

Marina Lizio

Cerevance Ltd

Co-authored papers 19

Takeya Kasukawa

RIKEN Center for Integrative Medical Sciences

Co-authored papers 17

Timo Lassmann

Telethon Kids Institute, University of Western Australia

Co-authored papers 17

Carsten O Daub

International Institute of Molecular and Cell Biology in Warsaw

Co-authored papers 16

Dave S B Hoon

Saint John's Cancer Institute at Saint John's Health Center

Co-authored papers 16

Imad Abugessaisa

RIKEN Center for Integrative Medical Sciences

Co-authored papers 15

Akira Hasegawa

RIKEN Center for Integrative Medical Sciences

Co-authored papers 13

Masayoshi Itoh

RIKEN Center for Integrative Medical Sciences

Co-authored papers 13

Harukazu Suzuki

RIKEN Center for Integrative Medical Sciences

Co-authored papers 13

Jayson Harshbarger

RIKEN Center for Integrative Medical Sciences

Co-authored papers 12

Nicolas Bertin

University Bordeaux, CNRS

Co-authored papers 11

Erik Arner

RIKEN Center for Integrative Medical Sciences (IMS)

Co-authored papers 9

David A Hume

Mater Research Institute-UQ, Translational Research Institute

Co-authored papers 8

Jordan A Ramilowski

Advanced Medical Research Center, Yokohama City University

Co-authored papers 8

Jay W Shin

Genome Institute of Singapore (GIS)

Co-authored papers 7

Michael Rehli

University Hospital Regensburg

Co-authored papers 7

Shohei Noma

Center for Integrative Medical Sciences

Co-authored papers 7

Albin Sandelin

University of Copenhagen

Co-authored papers 7

Robin Andersson

University of Copenhagen

Co-authored papers 6

Hiromi Nishiyori

Center for Integrative Medical Sciences

Co-authored papers 6

Christine A Wells

The University of Melbourne

Co-authored papers 6

Mitsuyoshi Murata

Center for Integrative Medical Sciences

Co-authored papers 6

Kim M Summers

Mater Research Institute-University of Queensland, Translational Research Institute

Co-authored papers 6

Yuri Ishizu

RIKEN Center for Life Science Technologies

Co-authored papers 6

Andreas Lennartsson

Karolinska Institute

Co-authored papers 6

Peter Heutink

German Center for Neurodegenerative Diseases (DZNE).

Co-authored papers 6

1 - 30

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