Author details

Full Name

Alan Ruttenberg

Affiliation

University at Buffalo

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

Timothy Clark (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37873508	Improving the Quality and Utility of Electronic Health Record Data through Ontologies.	Standards (Basel)	2023
37873508	Improving the Quality and Utility of Electronic Health Record Data through Ontologies.	Standards (Basel)	2023
37609265	MRIO: The Magnetic Resonance Imaging Acquisition and Analysis Ontology.	bioRxiv	2023
37609265	MRIO: The Magnetic Resonance Imaging Acquisition and Analysis Ontology.	bioRxiv	2023
34697637	OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.	Database (Oxford)	2021
34697637	OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.	Database (Oxford)	2021
32819435	Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology.	J Biomed Semantics	2020
32819435	Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology.	J Biomed Semantics	2020
28003147	Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem.	J Biomed Inform	2017
27899649	Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.	Nucleic Acids Res	2017
28003147	Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem.	J Biomed Inform	2017
27733503	Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration.	Nucleic Acids Res	2017
27733503	Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration.	Nucleic Acids Res	2017
27899649	Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.	Nucleic Acids Res	2017
27128319	The Ontology for Biomedical Investigations.	PLoS One	2016
27152146	The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology.	J Biomed Semantics	2016
27377652	The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.	J Biomed Semantics	2016
27175225	OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data.	J Biomed Semantics	2016
27128319	The Ontology for Biomedical Investigations.	PLoS One	2016
27990175	The development of non-coding RNA ontology.	Int J Data Min Bioinform	2016
27990175	The development of non-coding RNA ontology.	Int J Data Min Bioinform	2016
27152146	The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology.	J Biomed Semantics	2016
27175225	OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data.	J Biomed Semantics	2016
27377652	The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.	J Biomed Semantics	2016
25562316	Finding our way through phenotypes.	PLoS Biol	2015
25481008	flowCL: ontology-based cell population labelling in flow cytometry.	Bioinformatics	2015
25562316	Finding our way through phenotypes.	PLoS Biol	2015
25894391	Toll-like receptor signaling in vertebrates: testing the integration of protein, complex, and pathway data in the protein ontology framework.	PLoS One	2015
26086602	Correction: Toll-Like Receptor Signaling in Vertebrates: Testing the Integration of Protein, Complex, and Pathway Data in the Protein Ontology Framework.	PLoS One	2015
26086602	Correction: Toll-Like Receptor Signaling in Vertebrates: Testing the Integration of Protein, Complex, and Pathway Data in the Protein Ontology Framework.	PLoS One	2015
25894391	Toll-like receptor signaling in vertebrates: testing the integration of protein, complex, and pathway data in the protein ontology framework.	PLoS One	2015
25481008	flowCL: ontology-based cell population labelling in flow cytometry.	Bioinformatics	2015
24270789	Protein Ontology: a controlled structured network of protein entities.	Nucleic Acids Res	2014
24270789	Protein Ontology: a controlled structured network of protein entities.	Nucleic Acids Res	2014
24667848	The logic of surveillance guidelines: an analysis of vaccine adverse event reports from an ontological perspective.	PLoS One	2014
24667848	The logic of surveillance guidelines: an analysis of vaccine adverse event reports from an ontological perspective.	PLoS One	2014
24303273	An ontology-based method for secondary use of electronic dental record data.	AMIA Jt Summits Transl Sci Proc	2013
24314207	The neurological disease ontology.	J Biomed Semantics	2013
24303273	An ontology-based method for secondary use of electronic dental record data.	AMIA Jt Summits Transl Sci Proc	2013
24314207	The neurological disease ontology.	J Biomed Semantics	2013
22402613	A strategy for building neuroanatomy ontologies.	Bioinformatics	2012
22402613	A strategy for building neuroanatomy ontologies.	Bioinformatics	2012
21929785	The representation of protein complexes in the Protein Ontology (PRO).	BMC Bioinformatics	2011
21929785	The representation of protein complexes in the Protein Ontology (PRO).	BMC Bioinformatics	2011
20006477	Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience.	Artif Intell Med	2010
21304729	Meeting Report: BioSharing at ISMB 2010.	Stand Genomic Sci	2010
20884915	Ontology and the future of dental research informatics.	J Am Dent Assoc	2010
20569493	OntoFox: web-based support for ontology reuse.	BMC Res Notes	2010
20006477	Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience.	Artif Intell Med	2010
20626927	Modeling biomedical experimental processes with OBI.	J Biomed Semantics	2010

1 - 50 of 68

Licong Cui

The University of Texas Health Science Center at Houston

Career Start Year 2011

Number of shared co-authors 4

Simon Jupp

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2009

Number of shared co-authors 27

Ernesto Jim??nez-Ruiz

City University of London

Career Start Year 2008

Number of shared co-authors 11

Janna Hastings

Institute for Implementation Science in Health Care, University of Zurich

Career Start Year 2008

Number of shared co-authors 19

Csongor Nyulas

Stanford University

Career Start Year 2008

Number of shared co-authors 2

Jamie P. McCusker

Rensselaer Polytechnic Institute

Career Start Year 2008

Number of shared co-authors 15

Christopher J O Baker

University of New Brunswick

Career Start Year 2007

Number of shared co-authors 2

Robert Hoehndorf

King Abdullah University of Science and Technology

Career Start Year 2006

Number of shared co-authors 23

Helena F Deus

Elsevier Inc.

Career Start Year 2006

Number of shared co-authors 7

Deborah L McGuinness

Rensselaer Polytechnic Institute

Career Start Year 2005

Number of shared co-authors 21

Leyla Garcia

European Bioinformatics Institute

Career Start Year 2005

Number of shared co-authors 14

Karin Verspoor

National Centre for Infections in Cancer, 5Peter MacCallum Cancer Centre

Career Start Year 2005

Number of shared co-authors 11

Jesualdo Tom??s Fern??ndez-Breis

Universidad de Murcia

Career Start Year 2004

Number of shared co-authors 5

Erick Antezana

Norwegian University of Science and Technology

Career Start Year 2004

Number of shared co-authors 12

Dietrich Rebholz-Schuhmann

University of Cologne

Career Start Year 2003

Number of shared co-authors 11

Cui Tao

The University of Texas Health Science Center at Houston

Career Start Year 2002

Number of shared co-authors 14

Indra Neil Sarkar

Center for Biomedical Informatics, Brown University

Career Start Year 2001

Number of shared co-authors 3

Michael Bada

Center for Health AI, University of Colorado Anschutz Medical Campus

Career Start Year 2000

Number of shared co-authors 10

Robert Stevens

The University of Manchester

Career Start Year 1998

Number of shared co-authors 31

Harold R Solbrig

Johns Hopkins University

Career Start Year 1998

Number of shared co-authors 17

Victor Maojo

Universidad Politecnica de Madrid

Career Start Year 1997

Number of shared co-authors 2

Stefan Schulz

Institute for Medical Informatics, Medical University of Graz

Career Start Year 1997

Number of shared co-authors 7

Mark D Wilkinson

Universidad Politecnica de Madrid (UPM)

Career Start Year 1993

Number of shared co-authors 13

Lawrence E Hunter

University of Colorado School of Medicine

Career Start Year 1993

Number of shared co-authors 7

Carole Goble

University of Manchester

Career Start Year 1993

Number of shared co-authors 29

Martin Boeker

Institute of AI and Informatics in Medicine, Technical University of Munich

Career Start Year 1992

Number of shared co-authors 2

Alexa T McCray

Columbia University in the City of New York.

Career Start Year 1990

Number of shared co-authors 1

Prakash M Nadkarni

College of Nursing, University of Iowa Hospitals and Clinics

Career Start Year 1988

Number of shared co-authors 5

Mark A Musen

Stanford Center for Biomedical Informatics Research, Stanford University

Career Start Year 1987

Number of shared co-authors 19

Christopher G Chute

Brown University, Brown University Warren Alpert Medical School, Dartmouth-Hitchcock Medical Center, Harvard School of Public Health, Johns Hopkins Medicine, Mayo Clinic Minnesota

Career Start Year 1985

Number of shared co-authors 29

row(s) 1 - 30 of 30

Barry Smith

University at Buffalo

Co-authored papers 16

Darren A Natale

Georgetown University Medical Center

Co-authored papers 9

Judith A Blake

Co-authored papers 8

Yongqun He

University of Michigan Medical School ann arbor

Co-authored papers 8

M??lanie Courtot

Ontario Institute for Cancer Research

Co-authored papers 8

Alexander D Diehl

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Co-authored papers 7

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 6

William D Duncan

University of Florida

Co-authored papers 6

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 6

Melissa A Haendel

Co-authored papers 6

Yu Lin

School of Pharmaceutical Sciences, Sun Yat-sen University

Co-authored papers 5

Peter D'Eustachio

NYU Grossman School of Medicine

Co-authored papers 5

Cecilia N Arighi

University of Delaware

Co-authored papers 5