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Author Details

Anirvan M Sengupta
Center for Computational Neuroscience, Flatiron Institute
1994
48
22
PMIDPaper TitleJournal TitlePublished Year
36635497Coordinated drift of receptive fields in Hebbian/anti-Hebbian network models during noisy representation learning.Nat Neurosci2023
35026035Neural Circuits for Dynamics-Based Segmentation of Time Series.Neural Comput2022
36206431Deep Learning the Functional Renormalization Group.Phys Rev Lett2022
34412114A Biologically Plausible Neural Network for Multichannel Canonical Correlation Analysis.Neural Comput2021
32694989Neurons as Canonical Correlation Analyzers.Front Comput Neurosci2020
28957017Why Do Similarity Matching Objectives Lead to Hebbian/Anti-Hebbian Networks?Neural Comput2018
32995506Translation inhibition and resource balance in the TX-TL cell-free gene expression system.Synth Biol (Oxf)2017
26589460Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2.BMC Genomics2015
26252709First Passage Times, Lifetimes, and Relaxation Times of Unfolded Proteins.Phys Rev Lett2015
25536038Breaking an epigenetic chromatin switch: curious features of hysteresis in Saccharomyces cerevisiae telomeric silencing.PLoS One2014
23588040Titration and hysteresis in epigenetic chromatin silencing.Phys Biol2013
23874171The role of multiple marks in epigenetic silencing and the emergence of a stable bivalent chromatin state.PLoS Comput Biol2013
22518845Internucleosomal interactions mediated by histone tails allow distant communication in chromatin.J Biol Chem2012
23057825SLIQ: simple linear inequalities for efficient contig scaffolding.J Comput Biol2012
21300780Regulated antisense transcription controls expression of cell-type-specific genes in yeast.Mol Cell Biol2011
22851788Statistical Mechanics of Transcription-Factor Binding Site Discovery Using Hidden Markov Models.J Stat Phys2011
22123989Theoretical analysis of the role of chromatin interactions in long-range action of enhancers and insulators.Proc Natl Acad Sci U S A2011
21779158Does the potential for chaos constrain the embryonic cell-cycle oscillator?PLoS Comput Biol2011
20655355Locus dependence in epigenetic chromatin silencing.Biosystems2010
20576136SOPRA: Scaffolding algorithm for paired reads via statistical optimization.BMC Bioinformatics2010
18987858Geometry and topology of parameter space: investigating measures of robustness in regulatory networks.J Math Biol2009
19583839OHMM: a Hidden Markov Model accurately predicting the occupancy of a transcription factor with a self-overlapping binding motif.BMC Bioinformatics2009
19119410Shape, size, and robustness: feasible regions in the parameter space of biochemical networks.PLoS Comput Biol2009
19174167Inheritance of epigenetic chromatin silencing.J Theor Biol2009
18245482Repression of B-cell linker (BLNK) and B-cell adaptor for phosphoinositide 3-kinase (BCAP) is important for lymphocyte transformation by rel proteins.Cancer Res2008
19105805Better estimation of protein-DNA interaction parameters improve prediction of functional sites.BMC Biotechnol2008
17991991Epigenetic chromatin silencing: bistability and front propagation.Phys Biol2007
16537373Thermodynamic and kinetic modeling of transcriptional pausing.Proc Natl Acad Sci U S A2006
16547039Analysis of Escherichia coli global gene expression profiles in response to overexpression and deletion of CspC and CspE.J Bacteriol2006
15697625Optimal path to epigenetic switching.Phys Rev E Stat Nonlin Soft Matter Phys2005
16582458Quantitative modeling and data analysis of SELEX experiments.Phys Biol2005
15882701Stochastic evolutionary dynamics on two levels.J Theor Biol2005
15681646G-protein-coupled enzyme cascades have intrinsic properties that improve signal localization and fidelity.Biophys J2005
15746285Non-additivity in protein-DNA binding.Bioinformatics2005
15331021Combined analysis of expression data and transcription factor binding sites in the yeast genome.BMC Genomics2004
15598821Repression of the yeast HO gene by the MATalpha2 and MATa1 homeodomain proteins.Nucleic Acids Res2004
14597652A biophysical approach to transcription factor binding site discovery.Genome Res2003
12875822Mutation-selection networks of cancer initiation: tumor suppressor genes and chromosomal instability.J Theor Biol2003
11854503Specificity and robustness in transcription control networks.Proc Natl Acad Sci U S A2002
12446840The role of chromosomal instability in tumor initiation.Proc Natl Acad Sci U S A2002
10634779Communication through a diffusive medium: coherence and capacityScience2000
11106590Engineering aspects of enzymatic signal transduction: photoreceptors in the retina.Biophys J2000
11970154Distributions of singular values for some random matrices.Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics1999
10060686Nonequilibrium dynamics following a quench to the critical point in a semi-infinite system.Phys Rev Lett1996
9985536Overscreened single-channel Kondo problem.Phys Rev B Condens Matter1996
10058023Solution of the Two-Impurity, Two-Channel Kondo Model.Phys Rev Lett1995
9980080Non-Fermi-liquid behavior near a T=0 spin-glass transition.Phys Rev B Condens Matter1995
10009815Emery-Kivelson solution of the two-channel Kondo problem.Phys Rev B Condens Matter1994
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Collaborators

Ruadhan A O'Flanagan
BioMaps Institute, The State University of New Jersey
Co-authored papers 5
Eduardo D Sontag
Co-authored papers 3
Andrew K Vershon
Waksman Institute, Rutgers University
Co-authored papers 3
Jonathan R Mathias
Colleges of Life and Environmental Sciences, University of Birmingham
Co-authored papers 2
Wei Dai
Yuecheng District Centers for Disease Control and Prevention
Co-authored papers 1
Sean E Hanlon
Drew University, National Institutes of Health, Rutgers University New Brunswick, University of North Carolina at Chapel Hill
Co-authored papers 1
Jeffrey J Delrow
Clinical Research Division, Fred Hutchinson Cancer Research Center
Co-authored papers 1
Thomas Ried
Center for Cancer Research, National Cancer Institute
Co-authored papers 1
Emily S W Wong
Co-authored papers 1
Brian J Gelfand
Vanderbilt University Medical Center
Co-authored papers 1
Samaneh Nasiri
Massachusetts General Hospital (MGH)
Co-authored papers 1
Partha P Mitra
Center for Computational Brain Research, Indian Institute of Technology Madras
Co-authored papers 1
Nicholas Apostolopoulos
Yale University
Co-authored papers 1
Roland Eils
Berlin Institute of Health (BIH) and Charite
Co-authored papers 1
Paul Flicek
European Bioinformatics Institute
Co-authored papers 1
Kerwyn Casey Huang
Stanford University, Stanford University School of Medicine
Co-authored papers 1
Bert Vogelstein
Co-authored papers 1
Release 1.2