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Author Details

Karla M Neugebauer
Yale University
1985
106
52
Wade Schulz (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36891287Transcription elongation defects link oncogenic splicing factor mutations to targetable alterations in chromatin landscape.bioRxiv2023
37478824The promoter as a trip navigator: Guiding alternative polyadenylation site destinations.Mol Cell2023
37156649Tudor-dimethylarginine interactions: the condensed version.Trends Biochem Sci2023
35303483Precision analysis of mutant U2AF1 activity reveals deployment of stress granules in myeloid malignancies.Mol Cell2022
35609439Transcriptome-wide mapping reveals a diverse dihydrouridine landscape including mRNA.PLoS Biol2022
36224177The coilin N-terminus mediates multivalent interactions between coilin and Nopp140 to form and maintain Cajal bodies.Nat Commun2022
35154260Identification of Alternative Polyadenylation in <i>Cyanidioschyzon merolae</i> Through Long-Read Sequencing of mRNA.Front Genet2022
33291060Nuclear mechanisms of gene expression control: pre-mRNA splicing as a life or death decision.Curr Opin Genet Dev2021
33811916Transcription Regulation Through Nascent RNA Folding.J Mol Biol2021
34645977Generation of scalable cancer models by combining AAV-intron-trap, CRISPR/Cas9, and inducible Cre-recombinase.Commun Biol2021
33969332Maternal respiratory SARS-CoV-2 infection in pregnancy is associated with a robust inflammatory response at the maternal-fetal interface.Med2021
34085232Calorimetric Heat Dissipation Measurements of Developing Zebrafish Embryos.Methods Mol Biol2021
33440169Co-transcriptional splicing regulates 3' end cleavage during mammalian erythropoiesis.Mol Cell2021
32428456Heat Oscillations Driven by the Embryonic Cell Cycle Reveal the Energetic Costs of Signaling.Dev Cell2020
32049586Contribution of increasing plasma membrane to the energetic cost of early zebrafish embryogenesis.Mol Biol Cell2020
33378663Widespread Transcriptional Readthrough Caused by Nab2 Depletion Leads to Chimeric Transcripts with Retained Introns.Cell Rep2020
33085989Preparation of Mammalian Nascent RNA for Long Read Sequencing.Curr Protoc Mol Biol2020
32386545Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States.Cell2020
32511630Coast-to-coast spread of SARS-CoV-2 in the United States revealed by genomic epidemiology.medRxiv2020
30864659Uncoupling of nucleo-cytoplasmic RNA export and localization during stress.Nucleic Acids Res2019
32493763Pre-mRNA Splicing in the Nuclear Landscape.Cold Spring Harb Symp Quant Biol2019
31371351Nascent RNA and the Coordination of Splicing with Transcription.Cold Spring Harb Perspect Biol2019
30713074Heat Oscillations Driven by the Embryonic Cell Cycle Reveal the Energetic Costs of Signaling.Dev Cell2019
29467249RNA tales - how embryos read and discard messages from mom.J Cell Sci2018
29903723Long-read sequencing of nascent RNA reveals coupling among RNA processing events.Genome Res2018
30228869Blood Relatives: Splicing Mechanisms underlying Erythropoiesis in Health and Disease.F1000Res2018
29473743Dynamics and Function of Nuclear Bodies during Embryogenesis.Biochemistry2018
27858508Activation of transcription enforces the formation of distinct nuclear bodies in zebrafish embryos.RNA Biol2017
28486008Special focus on the Cajal Body.RNA Biol2017
28456961Purification of Zygotically Transcribed RNA through Metabolic Labeling of Early Zebrafish Embryos.Methods Mol Biol2017
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition.Genome Res2017
28977534Fractionation iCLIP detects persistent SR protein binding to conserved, retained introns in chromatin, nucleoplasm and cytoplasm.Nucleic Acids Res2017
28592444Cellular differentiation state modulates the mRNA export activity of SR proteins.J Cell Biol2017
28792005Splicing and transcription touch base: co-transcriptional spliceosome assembly and function.Nat Rev Mol Cell Biol2017
28734934Analysis of RNA-protein interactions in vertebrate embryos using UV crosslinking approaches.Methods2017
27873472Perfect timing: splicing and transcription rates in living cells.Wiley Interdiscip Rev RNA2017
26944680SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export.Genes Dev2016
27357569Droplet organelles?EMBO J2016
27020755Splicing of Nascent RNA Coincides with Intron Exit from RNA Polymerase II.Cell2016
25400101Introns and gene expression: cellular constraints, transcriptional regulation, and evolutionary consequences.Bioessays2015
26283795Paraspeckles: paragons of functional aggregation.J Cell Biol2015
25929182Quantification of co-transcriptional splicing from RNA-Seq data.Methods2015
25970135Coilin: The first 25 years.RNA Biol2015
25780198RNA: master or servant?RNA2015
24440719The earliest transcribed zygotic genes are short, newly evolved, and different across species.Cell Rep2014
25514182The coilin interactome identifies hundreds of small noncoding RNAs that traffic through Cajal bodies.Mol Cell2014
24549674Chromatin immunoprecipitation approaches to determine co-transcriptional nature of splicing.Methods Mol Biol2014
24389545Good cap/bad cap: how the cap-binding complex determines RNA fate.Nat Struct Mol Biol2014
23042601Cajal bodies: where form meets function.Wiley Interdiscip Rev RNA2013
23638305Counting on co-transcriptional splicing.F1000Prime Rep2013
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Collaborators

Yaron Shav-Tal
Co-authored papers 5
Ina Poser
Max Planck Institute of Molecular Cell Biology and Genetics
Co-authored papers 5
Edward Courchaine
Yale University School of Medicine
Co-authored papers 5
Tara Alpert
Yale School of Public Health
Co-authored papers 5
Nathan D Grubaugh
Yale School of Public Health
Co-authored papers 3
Frank Buchholz
University Hospital Carl Gustav Carus, Technische Universitat (TU) Dresden
Co-authored papers 3
Albert I Ko
Instituto Goncalo Moniz, Yale School of Public Health
Co-authored papers 3
Chantal B F Vogels
Yale School of Public Health
Co-authored papers 3
Akiko Iwasaki
Yale University
Co-authored papers 3
Saad B Omer
Yale School of Public Health
Co-authored papers 2
Mary E Petrone
Sydney Institute for Infectious Diseases, The University of Sydney
Co-authored papers 2
Ellen F Foxman
Yale School of Medicine
Co-authored papers 2
Andrej Shevchenko
Max Planck Institute of Molecular Cell Biology and Genetics
Co-authored papers 2
Marie L Landry
Yale School of Medicine
Co-authored papers 2
Alexander L Greninger
University of Washington Medical Center
Co-authored papers 2
Keith R Jerome
Fred Hutchinson Cancer Center
Co-authored papers 2
Nicholas J Loman
University of Birmingham
Co-authored papers 2
Nagarjuna R Cheemarla
Yale School of Medicine
Co-authored papers 2
Joseph R Fauver
University of Nebraska Medical Center
Co-authored papers 2
Anderson F Brito
Yale School of Medicine, USA Instituto Todos pela Saude
Co-authored papers 2
Anne L Wyllie
Yale School of Public Health
Co-authored papers 2
John L Bixby
Co-authored papers 2
Isabel M Ott
Yale School of Public Health
Co-authored papers 2
Richard A Martinello
Yale University
Co-authored papers 2
Daniel Schaft
Technische Universitaet Dresden
Co-authored papers 1
Tobias Madl
Gottfried Schatz Research Center, Medical University of Graz
Co-authored papers 1
Jessica M Toothaker
Yale School of Medicine
Co-authored papers 1
Stephan Preibisch
Howard Hughes Medical Institute
Co-authored papers 1
Katherine H Campbell
Yale School of Medicine
Co-authored papers 1
Harvey J Kliman
Yale University School of Medicine
Co-authored papers 1
Release 1.2