Skip to Main Content

Author Details

Manimozhiyan Arumugam
Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen
2004
69
39
PMIDPaper TitleJournal TitlePublished Year
37344168Impact of acute alcohol consumption on circulating microbiome in asymptomatic alcohol-related liver disease.Gut2024
37427928Quantitative differences in synthetic gut microbial inoculums do not affect the final stabilized <i>in vitro</i> community compositions.mSystems2023
37750706<i>Clostridium scindens</i> secretome suppresses virulence gene expression of <i>Clostridioides difficile</i> in a bile acid-independent manner.Microbiol Spectr2023
37012386Oral supplementation of nicotinamide riboside alters intestinal microbial composition in rats and mice, but not humans.NPJ Aging2023
34598063Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs.Environ Int2022
35352373The effect of gluten in adolescents and young adults with gastrointestinal symptoms: a blinded randomised cross-over trial.Aliment Pharmacol Ther2022
36304282MIntO: A Modular and Scalable Pipeline For Microbiome Metagenomic and Metatranscriptomic Data Integration.Front Bioinform2022
33257833Utilizing the gut microbiome in decompensated cirrhosis and acute-on-chronic liver failure.Nat Rev Gastroenterol Hepatol2021
33658065Trans-ethnic gut microbial signatures of prediabetic subjects from India and Denmark.Genome Med2021
33658058Trans-ethnic gut microbiota signatures of type 2 diabetes in Denmark and India.Genome Med2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
34665009A Previously Undescribed Highly Prevalent Phage Identified in a Danish Enteric Virome Catalog.mSystems2021
34313459Ecological Adaptation and Succession of Human Fecal Microbial Communities in an Automated <i>In Vitro</i> Fermentation System.mSystems2021
34261503Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly.Genome Biol2021
31203205Trust is good, control is better: technical considerations in blood microbiome analysis.Gut2020
32885580Variation in Bile Microbiome by the Etiology of Cholestatic Liver Disease.Liver Transpl2020
32620774Butyrate producing colonic Clostridiales metabolise human milk oligosaccharides and cross feed on mucin via conserved pathways.Nat Commun2020
32947608The intestinal microbiome is a co-determinant of the postprandial plasma glucose response.PLoS One2020
32143718Perturbation of gut microbiota decreases susceptibility but does not modulate ongoing autoimmune neurological disease.J Neuroinflammation2020
29581241Circulating microbiome in blood of different circulatory compartments.Gut2019
33499919Impaired glucose metabolism and altered gut microbiome despite calorie restriction of ob/ob mice.Anim Microbiome2019
31664237Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation.Nat Med2019
31399723Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.Nat Biotechnol2019
31341288Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.Nat Biotechnol2019
30800122Compartmentalization of Immune Response and Microbial Translocation in Decompensated Cirrhosis.Front Immunol2019
30936548Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation.Nat Med2019
30936547Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer.Nat Med2019
30303739Genes controlling the activation of natural killer lymphocytes are epigenetically remodeled in intestinal cells from germ-free mice.FASEB J2019
29255284Enterotypes in the landscape of gut microbial community composition.Nat Microbiol2018
30349083Recovery of gut microbiota of healthy adults following antibiotic exposure.Nat Microbiol2018
29440750Publisher Correction: Enterotypes in the landscape of gut microbial community composition.Nat Microbiol2018
29482588Antifibrotic and molecular aspects of rifaximin in alcoholic liver disease: study protocol for a randomized controlled trial.Trials2018
26408641Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer.Gut2017
28390422High-fat feeding rather than obesity drives taxonomical and functional changes in the gut microbiota in mice.Microbiome2017
28470190Corrigendum: Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota.Nature2017
28935732Complete Genome Sequences of <i>emm111</i> Type <i>Streptococcus pyogenes</i> Strain GUR, with Antitumor Activity, and Its Derivative Strain GURSA1 with an Inactivated <i>emm</i> Gene.Genome Announc2017
27409811Human gut microbes impact host serum metabolome and insulin sensitivity.Nature2016
27306058Roux-en-Y gastric bypass surgery of morbidly obese patients induces swift and persistent changes of the individual gut microbiota.Genome Med2016
27240745An Improved Method for High Quality Metagenomics DNA Extraction from Human and Environmental Samples.Sci Rep2016
25758642Gut microbiome development along the colorectal adenoma-carcinoma sequence.Nat Commun2015
26633628Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota.Nature2015
26414350A catalog of the mouse gut metagenome.Nat Biotechnol2015
25654556Interplay between FGF21 and insulin action in the liver regulates metabolism.J Clin Invest2015
24401271Interplay between FGF21 and insulin action in the liver regulates metabolism.J Clin Invest2014
29805877Individuality and temporal stability of the human gut microbiome.Cent Asian J Glob Health2014
24997787Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.Nat Biotechnol2014
24997786An integrated catalog of reference genes in the human gut microbiome.Nat Biotechnol2014
23305080Consistent mutational paths predict eukaryotic thermostability.BMC Evol Biol2013
24141494Metagenomic species profiling using universal phylogenetic marker genes.Nat Methods2013
23985870Richness of human gut microbiome correlates with metabolic markers.Nature2013
  • 1 - 50 of 69

Recommended Authors

Cameron Martino
Center for Microbiome Innovation, University of California San Diego
Career Start Year 2018
Number of shared co-authors 14
Stephen Wandro
Center for Microbiome Innovation, University of California San Diego
Career Start Year 2017
Number of shared co-authors 8
Jose Manuel Mart??
Lawrence Livermore National Laboratory
Career Start Year 2015
Number of shared co-authors 0
Sambhawa Priya
University of Minnesota
Career Start Year 2015
Number of shared co-authors 5
Allyson L Byrd
Genentech Inc.
Career Start Year 2014
Number of shared co-authors 0
Berit Lilje
Statens Serum Institut
Career Start Year 2014
Number of shared co-authors 2
Justine W Debelius
Karolinska Institutet
Career Start Year 2014
Number of shared co-authors 16
Gail Ackermann
University of California San Diego
Career Start Year 2013
Number of shared co-authors 18
Pajau Vangay
University of Minnesota
Career Start Year 2013
Number of shared co-authors 8
Gregory Humphrey
University of California
Career Start Year 2013
Number of shared co-authors 18
Aubrey Bailey
Perelman School of Medicine, University of Pennsylvania
Career Start Year 2013
Number of shared co-authors 3
Susan Bullman
Fred Hutchinson Cancer Center
Career Start Year 2011
Number of shared co-authors 5
Nielson T Baxter
University of Michigan ann arbor
Career Start Year 2011
Number of shared co-authors 1
Pedro Belda-Ferre
University of California San Diego
Career Start Year 2011
Number of shared co-authors 13
Kevin Riehle
Baylor College of Medicine
Career Start Year 2011
Number of shared co-authors 6
Jaeyun Sung
Mayo Clinic
Career Start Year 2009
Number of shared co-authors 12
Chien-Chi Lo
Los Alamos National Laboratory
Career Start Year 2009
Number of shared co-authors 1
Timothy L Tickle
Broad Institute
Career Start Year 2007
Number of shared co-authors 16
Julia Oh
National Human Genome Research Institute
Career Start Year 2007
Number of shared co-authors 2
Brandi L Cantarel
University of Texas Southwestern Medical Center
Career Start Year 2006
Number of shared co-authors 11
Davide Albanese
Fondazione Edmund Mach
Career Start Year 2006
Number of shared co-authors 13
Bonnie L Hurwitz
The University of Arizona
Career Start Year 2006
Number of shared co-authors 13
Douglas W Fadrosh
University of California san francisco
Career Start Year 2005
Number of shared co-authors 7
Emiley A Eloe-Fadrosh
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
Career Start Year 2005
Number of shared co-authors 20
Matthieu Pichaud
Novartis Institute for Biomedical Research
Career Start Year 2004
Number of shared co-authors 4
Libusha Kelly
Albert Einstein College of Medicine
Career Start Year 2001
Number of shared co-authors 4
Aye Wollam
McDonnell Genome Institute, Washington University School of Medicine
Career Start Year 2000
Number of shared co-authors 29
Shibu Yooseph
University of Central Florida
Career Start Year 1998
Number of shared co-authors 29
Christian Hoffmann
Food Research Center (FoRC)
Career Start Year 1998
Number of shared co-authors 7
James R Brown
GlaxoSmithKline Pharma R&D, 1250 S. Collegeville Rd, Collegeville
Career Start Year 1994
Number of shared co-authors 5

Collaborators

Peer Bork
University of Wurzburg
Co-authored papers 30
Torben Hansen
Co-authored papers 17
Jeroen Raes
KU Leuven - University of Leuven
Co-authored papers 15
Oluf Pedersen
Co-authored papers 15
S??ren Brunak
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Co-authored papers 9
Takuji Yamada
Tokyo Institute of Technology
Co-authored papers 8
Georg Zeller
Max Planck Institute for Developmental Biology
Co-authored papers 8
Michael R Brent
Co-authored papers 7
Nicola Segata
University of Trento
Co-authored papers 7
Torben Jørgensen
Co-authored papers 6
Jian Wang
Institute of Medical Research, Northwestern Polytechnical University
Co-authored papers 6
Huanming Yang
Experimental Research Center, China Academy of Chinese Medical Sciences
Co-authored papers 6
George M Weinstock
The Genome Center at Washington University, Washington University School of Medicine
Co-authored papers 6
Rob Knight
University of California
Co-authored papers 6
Dan Knights
University of Minnesota
Co-authored papers 6
Kristoffer Forslund
Max Delbruck Center for Molecular Medicine (MDC)
Co-authored papers 6
Curtis Huttenhower
Broad Institute of MIT and Harvard
Co-authored papers 5
Paul I Costea
Weizmann Institute of Science
Co-authored papers 4
Frederic D Bushman
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 4
Levi Waldron
City University of New York School of Public Health
Co-authored papers 4
Tatsuhiro Shibata
Kurume University School of Medicine
Co-authored papers 3
Richard A Gibbs
Baylor College of Medicine
Co-authored papers 3
Edoardo Pasolli
University of Naples Federico II
Co-authored papers 3
Claire M Fraser
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 3
Viswanathan Mohan
Co-authored papers 3
Jumana Y Al-Aama
King AbdulAziz University
Co-authored papers 3
Vera van Noort
Leiden University, Institute of Biology Leiden
Co-authored papers 3
Peter J Turnbaugh
University of California san francisco
Co-authored papers 3
Athanasios Typas
University of California san francisco
Co-authored papers 3
Morgan G I Langille
Dalhousie University
Co-authored papers 3
Release 1.2