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Author Details

Degui Zhi
University of Texas Health Science Center at Houston
2004
143
36
PMIDPaper TitleJournal TitlePublished Year
36711469Minimal Positional Substring Cover: A Haplotype Threading Alternative to Li & Stephens Model.bioRxiv2023
38014185Fast and accurate local ancestry inference with Recomb-Mix.bioRxiv2023
38039339FiMAP: A fast identity-by-descent mapping test for biobank-scale cohorts.PLoS Genet2023
37349109Fast inference of genetic recombination rates in biobank scale data.Genome Res2023
37018650Prediction of Brain Metastases Development in Patients With Lung Cancer by Explainable Artificial Intelligence From Electronic Health Records.JCO Clin Cancer Inform2023
37316352Minimal positional substring cover is a haplotype threading alternative to Li and Stephens model.Genome Res2023
37166451RaPID-Query for fast identity by descent search and genealogical analysis.Bioinformatics2023
36440908Syllable-PBWT for space-efficient haplotype long-match query.Bioinformatics2023
36712114FastRecomb: Fast inference of genetic recombination rates in biobank scale data.bioRxiv2023
36209109MetaRNN: differentiating rare pathogenic and rare benign missense SNVs and InDels using deep learning.Genome Med2022
35836130Toward a standard formal semantic representation of the model card report.BMC Bioinformatics2022
35466079Recurrent neural network models (CovRNN) for predicting outcomes of patients with COVID-19 on admission to hospital: model development and validation using electronic health record data.Lancet Digit Health2022
35785021P-smoother: efficient PBWT smoothing of large haplotype panels.Bioinform Adv2022
36472573Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts.Gigascience2022
33476339RAFFI: Accurate and fast familial relationship inference in large scale biobank studies using RaPID.PLoS Genet2021
33713608Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.Am J Hum Genet2021
33624749d-PBWT: dynamic positional Burrows-Wheeler transform.Bioinformatics2021
33847587Texas Public Agencies' Tweets and Public Engagement During the COVID-19 Pandemic: Natural Language Processing Approach.JMIR Public Health Surveill2021
33593342Personalized genealogical history of UK individuals inferred from biobank-scale IBD segments.BMC Biol2021
34597766Real World Long-term Assessment of The Efficacy of Tocilizumab in Patients with COVID-19: Results From A Large De-identified Multicenter Electronic Health Record Dataset in the United States.Int J Infect Dis2021
34017034Med-BERT: pretrained contextualized embeddings on large-scale structured electronic health records for disease prediction.NPJ Digit Med2021
33399855Association of Sickle Cell Trait With Incidence of Coronary Heart Disease Among African American Individuals.JAMA Netw Open2021
33306549Identifying influential neighbors in social networks and venue affiliations among young MSM: a data science approach to predict HIV infection.AIDS2021
31498715Alterations in the Gut Microbiome at 6 Months of Age in Obese Latino Infants.J Am Coll Nutr2020
33140058Discovery of runs-of-homozygosity diplotype clusters and their associations with diseases in UK Biobank.medRxiv2020
32693816iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching.BMC Med Genomics2020
32735224Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study.J Med Internet Res2020
32930711Representation of EHR data for predictive modeling: a comparison between UMLS and other terminologies.J Am Med Inform Assoc2020
32357322Vasopressor treatment and mortality following nontraumatic subarachnoid hemorrhage: a nationwide electronic health record analysis.Neurosurg Focus2020
32127627Collective effects of long-range DNA methylations predict gene expressions and estimate phenotypes in cancer.Sci Rep2020
29672736All pins are not created equal: communicating skin cancer visually on Pinterest.Transl Behav Med2019
29855607Genome-wide meta-analysis of SNP-by9-ACEI/ARB and SNP-by-thiazide diuretic and effect on serum potassium in cohorts of European and African ancestry.Pharmacogenomics J2019
31407531Genome-wide meta-analysis of SNP and antihypertensive medication interactions on left ventricular traits in African Americans.Mol Genet Genomic Med2019
31345249RaPID: ultra-fast, powerful, and accurate detection of segments identical by descent (IBD) in biobank-scale cohorts.Genome Biol2019
31197365Network context matters: graph convolutional network model over social networks improves the detection of unknown HIV infections among young men who have sex with men.J Am Med Inform Assoc2019
31510689Efficient haplotype matching between a query and a panel for genealogical search.Bioinformatics2019
30712512The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: genomics with bigger data and wider applications.BMC Genomics2019
30712510Gene2vec: distributed representation of genes based on co-expression.BMC Genomics2019
30863429An Exome-Wide Sequencing Study of the GOLDN Cohort Reveals Novel Associations of Coding Variants and Fasting Plasma Lipids.Front Genet2019
30704510The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: genomics meets medicine.BMC Med Genomics2019
30704471A PheWAS study of a large observational epidemiological cohort of African Americans from the REGARDS study.BMC Med Genomics2019
31167638Multi-allelic positional Burrows-Wheeler transform.BMC Bioinformatics2019
31106051Predicting gene expression using DNA methylation in three human populations.PeerJ2019
30961579Time-sensitive clinical concept embeddings learned from large electronic health records.BMC Med Inform Decis Mak2019
27843151A DNA methylation biomarker of alcohol consumption.Mol Psychiatry2018
29908902A study of generalizability of recurrent neural network-based predictive models for heart failure onset risk using a large and heterogeneous EHR data set.J Biomed Inform2018
29986843Public Perception Analysis of Tweets During the 2015 Measles Outbreak: Comparative Study Using Convolutional Neural Network Models.J Med Internet Res2018
29854252Clinical Named Entity Recognition Using Deep Learning Models.AMIA Annu Symp Proc2018
29929837Tweeting about measles during stages of an outbreak: A semantic network approach to the framing of an emerging infectious disease.Am J Infect Control2018
30577731The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: systems biology on diverse data types.BMC Syst Biol2018
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Collaborators

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Laila Rasmy
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Jerome I Rotter
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Sharon L R Kardia
School of Public Health, University of Michigan ann arbor
Co-authored papers 6
Roby Joehanes
and Blood Institute, National Institutes of Health
Co-authored papers 6
Chunyu Liu
Boston University School of Public Health
Co-authored papers 6
Zhaoming Wang
St Jude Children's Research Hospital
Co-authored papers 6
Weihua Guan
Pennsylvania State University, University Park
Co-authored papers 6
Luigi Ferrucci
National Institute on Aging, National Institutes of Health
Co-authored papers 6
Jennifer A Smith
Co-authored papers 6
Release 1.2