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Author Details

Shoudan Liang
The University of Texas MD Anderson Cancer Center
1985
75
30
PMIDPaper TitleJournal TitlePublished Year
29224148Digital Restriction Enzyme Analysis of Methylation (DREAM).Methods Mol Biol2018
28074068A CpG island methylator phenotype in acute myeloid leukemia independent of IDH mutations and associated with a favorable outcome.Leukemia2017
28912502Caloric restriction delays age-related methylation drift.Nat Commun2017
28793860Local sequence and sequencing depth dependent accuracy of RNA-seq reads.BMC Bioinformatics2017
25972343TET2 Mutations Affect Non-CpG Island DNA Methylation at Enhancers and Transcription Factor-Binding Sites in Chronic Myelomonocytic Leukemia.Cancer Res2015
26562508Correction: SOX9 Regulates Multiple Genes in Chondrocytes, Including Genes Encoding ECM Proteins, ECM Modification Enzymes, Receptors, and Transporters.PLoS One2015
26158709PAND: A Distribution to Identify Functional Linkage from Networks with Preferential Attachment Property.PLoS One2015
26191087Bayesian Hierarchical Model for Differential Gene Expression Using RNA-seq Data.Stat Biosci2015
24414704Age-related epigenetic drift in the pathogenesis of MDS and AML.Genome Res2014
26357041BM-SNP: A Bayesian Model for SNP Calling Using High Throughput Sequencing Data.IEEE/ACM Trans Comput Biol Bioinform2014
25544748A role for BMP-induced homeobox gene MIXL1 in acute myelogenous leukemia and identification of type I BMP receptor as a potential target for therapy.Oncotarget2014
25229425SOX9 regulates multiple genes in chondrocytes, including genes encoding ECM proteins, ECM modification enzymes, receptors, and transporters.PLoS One2014
24875481TET1 is a maintenance DNA demethylase that prevents methylation spreading in differentiated cells.Nucleic Acids Res2014
24681603Potentiation of colon cancer susceptibility in mice by colonic epithelial PPAR-δ/β overexpression.J Natl Cancer Inst2014
23124522Stabilization of the promoter nucleosomes in nucleosome-free regions by the yeast Cyc8-Tup1 corepressor.Genome Res2013
26246865Nonparametric Bayesian Bi-Clustering for Next Generation Sequencing Count Data.Bayesian Anal2013
24367927Architecture of epigenetic reprogramming following Twist1-mediated epithelial-mesenchymal transition.Genome Biol2013
23748248Toward breaking the histone code: bayesian graphical models for histone modifications.Circ Cardiovasc Genet2013
23250739Access to the nucleus and functional association with c-Myc is required for the full oncogenic potential of οEGFR/EGFRvIII.J Biol Chem2013
23249680The epigenome of AML stem and progenitor cells.Epigenetics2013
22156612Modeling a lethal prostate cancer variant with small-cell carcinoma features.Clin Cancer Res2012
26726304A Bayesian Model for SNP Discovery Based on Next-Generation Sequencing Data.IEEE Int Workshop Genomic Signal Process Stat2012
23320938BM-BC: a Bayesian method of base calling for Solexa sequence data.BMC Bioinformatics2012
23320920Accuracy of RNA-Seq and its dependence on sequencing depth.BMC Bioinformatics2012
22952733Dynamic status of REST in the mouse ESC pluripotency network.PLoS One2012
22952045SINE retrotransposons cause epigenetic reprogramming of adjacent gene promoters.Mol Cancer Res2012
23083219dsPIG: a tool to predict imprinted genes from the deep sequencing of whole transcriptomes.BMC Bioinformatics2012
23075513Conserved DNA methylation patterns in healthy blood cells and extensive changes in leukemia measured by a new quantitative technique.Epigenetics2012
22777888The postnatal role of Sox9 in cartilage.J Bone Miner Res2012
22495388The role of antigen cross-presentation from leukemia blasts on immunity to the leukemia-associated antigen PR1.J Immunother2012
22228704REST regulates oncogenic properties of glioblastoma stem cells.Stem Cells2012
21113127Molecular mechanism by which the nucleoid occlusion factor, SlmA, keeps cytokinesis in check.EMBO J2011
22138693Dnmt3a is essential for hematopoietic stem cell differentiation.Nat Genet2011
21863128On differential gene expression using RNA-Seq data.Cancer Inform2011
21858034Common minor histocompatibility antigen discovery based upon patient clinical outcomes and genomic data.PLoS One2011
21760961Aberrant DNA methylation is associated with disease progression, resistance to imatinib and shortened survival in chronic myelogenous leukemia.PLoS One2011
21586619Detection of bladder cancer using novel DNA methylation biomarkers in urine sediments.Cancer Epidemiol Biomarkers Prev2011
21517792BM-map: Bayesian mapping of multireads for next-generation sequencing data.Biometrics2011
21456067Neuroendocrine prostate cancer xenografts with large-cell and small-cell features derived from a single patient's tumor: morphological, immunohistochemical, and gene expression profiles.Prostate2011
20107151Widespread and tissue specific age-related DNA methylation changes in mice.Genome Res2010
21172665TDRD3 is an effector molecule for arginine-methylated histone marks.Mol Cell2010
20716667Genome architecture marked by retrotransposons modulates predisposition to DNA methylation in cancer.Genome Res2010
20560965Cyclic neutropenia associated with T cell immunity to granulocyte proteases and a double de novo mutation in GFI1, a transcriptional regulator of ELANE.Br J Haematol2010
20404928Identification of SOX9 interaction sites in the genome of chondrocytes.PLoS One2010
19641626Local network topology in human protein interaction data predicts functional association.PLoS One2009
21798176Intragenomic evolution of a transcriptional enhancer in the genome of Strongylocentrotus purpuratus.Mar Genomics2009
19963934Analysis of epigenetic modifications by next generation sequencing.Annu Int Conf IEEE Eng Med Biol Soc2009
18178375Cell cycle-dependent nucleosome occupancy at cohesin binding sites in yeast chromosomes.Genomics2008
17941998fREDUCE: detection of degenerate regulatory elements using correlation with expression.BMC Bioinformatics2007
15755812Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays.Proc Natl Acad Sci U S A2005
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Collaborators

The University of Texas MD Anderson Cancer Center
Co-authored papers 23
Fels Cancer Institute for Personalized Medicine, Temple University School of Medicine
Co-authored papers 18
Johns Hopkins University
Co-authored papers 5
Baylor College of Medicine
Co-authored papers 4
The University of Texas MD Anderson Cancer Center
Co-authored papers 4
Systemix Institute
Co-authored papers 3
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The University of Texas MD Anderson Cancer Center
Co-authored papers 3
the University of Texas MD Anderson Cancer Center
Co-authored papers 2
The University of Texas MD Anderson Cancer Center
Co-authored papers 2
University of Texas MD Anderson Cancer Center
Co-authored papers 2
MD Anderson Cancer Center
Co-authored papers 2
The University of Chicago
Co-authored papers 2
The University of Texas MD Anderson Cancer Center
Co-authored papers 2
University of California san francisco
Co-authored papers 1
University of Texas Health Science Center at Houston Medical School
Co-authored papers 1
Columbia University
Co-authored papers 1
National Institute of Allergy and Infectious Disease, National Institutes of Health
Co-authored papers 1
Co-authored papers 1
Lawrence Livermore National Laboratory
Co-authored papers 1
NASA Ames Research Center
Co-authored papers 1
University of Texas MD Anderson Cancer Center
Co-authored papers 1
MD Anderson Cancer Center
Co-authored papers 1
University of North Carolina
Co-authored papers 1
Huntsman Cancer Institute, University of Utah
Co-authored papers 1
Co-authored papers 1
MD Anderson Cancer Center
Co-authored papers 1
The University of Texas M.D. Anderson Cancer Center
Co-authored papers 1
Georgia Cancer Center
Co-authored papers 1
Houston Methodist Cancer Center
Co-authored papers 1