Author details

Full Name

Kristin C Gunsalus

Affiliation

Center for Genomics and Systems Biology, New York University Abu Dhabi (NYUAD)

ORCID

Career Start Year

1995

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36698204	Î²-actin mediated H3K27ac changes demonstrate the link between compartment switching and enhancer-dependent transcriptional regulation.	Genome Biol	2023
37303042	Systems genetics identifies miRNA-mediated regulation of host response in COVID-19.	Hum Genomics	2023
36550289	A statistical framework for high-content phenotypic profiling using cellular feature distributions.	Commun Biol	2022
35657999	The Caenorhabditis elegans TDRD5/7-like protein, LOTR-1, interacts with the helicase ZNFX-1 to balance epigenetic signals in the germline.	PLoS Genet	2022
34029461	FRET-Based Probe for High-Throughput DNA Intercalator Drug Discovery and <i>In Vivo</i> Imaging.	ACS Sens	2021
33646376	The Microbiome of the Lebanese Wild Apple, Malus trilobata, is a Rich Source of Potential Biocontrol Agents for Fungal Post-harvest Pathogens of Apples.	Curr Microbiol	2021
34705339	NMR-Based Analysis of Nanobodies to SARS-CoV-2 Nsp9 Reveals a Possible Antiviral Strategy Against COVID-19.	Adv Biol (Weinh)	2021
34475390	Î²-actin dependent chromatin remodeling mediates compartment level changes in 3D genome architecture.	Nat Commun	2021
34223818	Novel LOTUS-domain proteins are organizational hubs that recruit <i>C. elegans</i> Vasa to germ granules.	Elife	2021
33992693	Structural Modeling of the SARS-CoV-2 Spike/Human ACE2 Complex Interface can Identify High-Affinity Variants Associated with Increased Transmissibility.	J Mol Biol	2021
34215187	Pheniqs 2.0: accurate, high-performance Bayesian decoding and confidence estimation for combinatorial barcode indexing.	BMC Bioinformatics	2021
32600310	NASQAR: a web-based platform for high-throughput sequencing data analysis and visualization.	BMC Bioinformatics	2020
33304760	Loss of <i>Î²</i>-Actin Leads to Accelerated Mineralization and Dysregulation of Osteoblast-Differentiation Genes during Osteogenic Reprogramming.	Adv Sci (Weinh)	2020
33067398	Diatom modulation of select bacteria through use of two unique secondary metabolites.	Proc Natl Acad Sci U S A	2020
30963487	The Role of Tertiary Structure in MicroRNA Target Recognition.	Methods Mol Biol	2019
31576392	Phenotyping of the thrashing forces exerted by partially immobilized C. elegans using elastomeric micropillar arrays.	Lab Chip	2019
31317238	Isolation of biologically active compounds from mangrove sediments.	Anal Bioanal Chem	2019
30713076	Comparative Epigenomics Reveals that RNA Polymerase II Pausing and Chromatin Domain Organization Control Nematode piRNA Biogenesis.	Dev Cell	2019
30735500	Tissue- and sex-specific small RNAomes reveal sex differences in response to the environment.	PLoS Genet	2019
30941417	miR-122 and Ago interactions with the HCV genome alter the structure of the viral 5' terminus.	Nucleic Acids Res	2019
29101221	Î²-Actin-dependent global chromatin organization and gene expression programs control cellular identity.	FASEB J	2018
29368663	Developmental dynamics of gene expression and alternative polyadenylation in the Caenorhabditis elegans germline.	Genome Biol	2018
27630097	Detecting and Trapping of a Single C. elegans Worm in a Microfluidic Chip for Automated Microplate Dispensing.	SLAS Technol	2017
28482037	A non-canonical site reveals the cooperative mechanisms of microRNA-mediated silencing.	Nucleic Acids Res	2017
28943090	Genome Architecture and Evolution of a Unichromosomal Asexual Nematode.	Curr Biol	2017
28623667	The genome and phenome of the green alga <i>Chloroidium sp.</i> UTEX 3007 reveal adaptive traits for desert acclimatization.	Elife	2017
26912668	In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics.	Mol Cell Proteomics	2016
27510972	A novel small molecule that disrupts a key event during the oocyte-to-embryo transition in C. elegans.	Development	2016
26887572	Erratum to: MINE: Module Identification in Networks.	BMC Bioinformatics	2016
26297805	Wild worm embryogenesis harbors ubiquitous polygenic modifier variation.	Elife	2015
26432829	Assembly and analysis of eukaryotic Argonaute-RNA complexes in microRNA-target recognition.	Nucleic Acids Res	2015
24873887	Label free cell-tracking and division detection based on 2D time-lapse images for lineage analysis of early embryo development.	Comput Biol Med	2014
23417009	Tertiary structure-based analysis of microRNA-target interactions.	RNA	2013
23722463	DevStaR: high-throughput quantification of C. elegans developmental stages.	IEEE Trans Med Imaging	2013
22940468	Electrical activity can impose time of day on the circadian transcriptome of pacemaker neurons.	Curr Biol	2012
21605434	MINE: Module Identification in Networks.	BMC Bioinformatics	2011
22054717	Networks in Caenorhabditis elegans.	Curr Opin Genet Dev	2011
21912654	Rational design of temperature-sensitive alleles using computational structure prediction.	PLoS One	2011
21529718	A high-resolution C. elegans essential gene network based on phenotypic profiling of a complex tissue.	Cell	2011
20382639	Benzo[a]pyrene diol epoxide stimulates an inflammatory response in normal human lung fibroblasts through a p53 and JNK mediated pathway.	Carcinogenesis	2010
22053146	Rapid and accurate developmental stage recognition of C. elegans from high-throughput image data.	Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit	2010
21177976	Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.	Science	2010
20522740	The landscape of C. elegans 3'UTRs.	Science	2010
19123269	Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network.	Nat Methods	2009
19536255	Unlocking the secrets of the genome.	Nature	2009
17986455	UTRome.org: a platform for 3'UTR biology in C. elegans.	Nucleic Acids Res	2008
18819079	Browsing multidimensional molecular networks with the generic network browser (N-Browse).	Curr Protoc Bioinformatics	2008
18725632	Mating induces an immune response and developmental switch in the Drosophila oviduct.	Proc Natl Acad Sci U S A	2008
18692475	A protein domain-based interactome network for C. elegans early embryogenesis.	Cell	2008
18235434	Protein production and purification.	Nat Methods	2008

1 - 50 of 75

Jiewei Xu

Quantitative Biosciences Institute (QBI), University of California san francisco

Career Start Year 2012

Number of shared co-authors 2

Kerstin Spirohn

Center for Cancer Systems Biology (CCSB), Dana-Farber Cancer Institute

Career Start Year 2010

Number of shared co-authors 5

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 4

Alexandre S Cristino

Griffith Institute for Drug Discovery, Griffith University

Career Start Year 2006

Number of shared co-authors 1

Francesc L??pez-Gir??ldez

Yale Center for Genomic Analysis

Career Start Year 2005

Number of shared co-authors 1

John A Calarco

University of Toronto

Career Start Year 2005

Number of shared co-authors 2

Zhaolei Zhang

University of Toronto

Career Start Year 2002

Number of shared co-authors 5

Hao Li

School of Public Health, Guangdong Medical University

Career Start Year 2002

Number of shared co-authors 0

Gary D Bader

University of Toronto

Career Start Year 2000

Number of shared co-authors 16

Stacey L Edwards

QIMR Berghofer Medical Research Institute

Career Start Year 1999

Number of shared co-authors 2

Nevan J Krogan (CM4AI)

University of California San Francisco

Career Start Year 1998

Number of shared co-authors 26

David R Powell

Biomedicine Discovery Institute, Monash University

Career Start Year 1998

Number of shared co-authors 0

Sarah A Teichmann

Wellcome Sanger Institute

Career Start Year 1996

Number of shared co-authors 11

James A Wohlschlegel

David Geffen School of Medicine, University of California Los Angeles

Career Start Year 1996

Number of shared co-authors 2

Trey Ideker (CM4AI)

University of California San Diego

Career Start Year 1996

Number of shared co-authors 10

Meng-Qiu Dong

National Institute of Biological Sciences

Career Start Year 1995

Number of shared co-authors 4

Michael Boutros

German Cancer Research Center (DKFZ) and Heidelberg University

Career Start Year 1995

Number of shared co-authors 0

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 14

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 11

Sheng Zhong

Peking-Tsinghua Center for Life Sciences, College of Life Sciences, Peking University

Career Start Year 1994

Number of shared co-authors 2

Edward M Marcotte

University of Texas

Career Start Year 1993

Number of shared co-authors 3

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 9

Bianca Habermann

Aix Marseille University, CNRS, Turing Center for Living Systems

Career Start Year 1993

Number of shared co-authors 2

Zhiping Weng

University of Massachusetts Medical School

Career Start Year 1992

Number of shared co-authors 9

Timothy R Hughes

University of Toronto

Career Start Year 1992

Number of shared co-authors 14

Andreas Beyer

University of Cologne

Career Start Year 1991

Number of shared co-authors 2

Chris P Ponting

The University of Edinburgh

Career Start Year 1989

Number of shared co-authors 10

Michael B Eisen

Howard Hughes Medical Institute, University of California Berkeley

Career Start Year 1988

Number of shared co-authors 6

Erich M Schwarz

Cornell University

Career Start Year 1984

Number of shared co-authors 3

Itai Yanai

Institute for Systems Genetics NYU Grossman School of Medicine

Career Start Year 1977

Number of shared co-authors 1

row(s) 1 - 30 of 30

Marc Vidal

Blavatnik Institute, Harvard Medical School

Co-authored papers 9

Kahn Rhrissorrakrai

T.J. Watson Research Center

Co-authored papers 8

Nicolas Bertin

University Bordeaux, CNRS

Co-authored papers 5

Anthony A Hyman

Max Planck Institute of Molecular Cell Biology and Genetics

Co-authored papers 5

Mark Gerstein

Yale University

Co-authored papers 4

Frederick P Roth

University of Toronto

Co-authored papers 4

Gaetano T Montelione

Rensselaer Polytechnic Institute

Co-authored papers 4

Marco Mangone

Arizona State University

Co-authored papers 3

Dong Han

Beijing University of Chinese Medicine

Co-authored papers 3

Muneesh Tewari

University of Michigan ann arbor

Co-authored papers 3

Rong Xiao

School of Public Health, Capital Medical University

Co-authored papers 2

Nicolas Simonis

Co-authored papers 2

Debra S Goldberg

University of Colorado at Boulder

Co-authored papers 2

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Co-authored papers 2

Steven Henikoff

Fred Hutchinson Cancer Center

Co-authored papers 2

Li-Chung Ma

Robert Wood Johnson Medical School, The State University of New Jersey

Co-authored papers 2

Thomas B Acton

Center for Advanced Biotechnology and Medicine, The State University of New Jersey

Co-authored papers 2

Richard Bonneau

Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation

Co-authored papers 2

Chi Kent Ho

Co-authored papers 2

Gabriel F Berriz

Harvard Medical School

Co-authored papers 2

Kavitha Venkatesan

Co-authored papers 2

Jason D Lieb

The University of Chicago

Co-authored papers 2

Haiyuan Yu

Weill Institute for Cell and Molecular Biology, Cornell University

Co-authored papers 2

Ritu Shastry

Co-authored papers 2

Julie Ahringer

Co-authored papers 2

Masayori Inouye

Robert Wood Johnson Medical School, Rutgers University

Co-authored papers 2

Eduardo D Sontag

Co-authored papers 2

Eric C Lai

Co-authored papers 2

Azra Krek

Co-authored papers 2

Dennis Shasha

Courant Institute of Mathematical Sciences, New York University

Co-authored papers 2

1 - 30

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