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Author Details

David W Deerfield
1986
31
12
PMIDPaper TitleJournal TitlePublished Year
17182265A quantum chemical study of the mechanism of action of Vitamin K carboxylase (VKC) III. Intermediates and transition states.Journal of Molecular Graphics and Modelling2007
17655326Mechanistic implications of the cysteine-nicotinamide adduct in aldehyde dehydrogenase based on quantum mechanical/molecular mechanical simulations.Biochemistry2007
17182266A quantum chemical study of the mechanism of action of Vitamin K epoxide reductase (VKOR) II. Transition states.Journal of Molecular Graphics and Modelling2007
18428720Mathematically complete nucleotide and protein sequence searching using Ssearch.Curr Protoc Bioinformatics2004
15390260Molecular recognition of aldehydes by aldehyde dehydrogenase and mechanism of nucleophile activation.Proteins: Structure, Function and Bioinformatics2004
15362125PM3-compatible zinc parameters optimized for metalloenzyme active sites.Journal of Computational Chemistry2004
12604191Initial catalytic events in class 3 aldehyde dehydrogenase: MM and QM/MM simulations.Chemico-Biological Interactions2003
11911661Strategies for multiple sequence alignment.Biotechniques2002
11710168The emerging science of very early detection of disease outbreaks.J Public Health Manag Pract2001
10868283Strategies for searching sequence databases.Biotechniques2000
9246626Classification of the environment of protein residues.1997
8589215Is Ca(II) ion binding to prothrombin fragment 1 intrinsically cooperative, or is the cooperative binding accounted for by self-association?Blood Coagulation and Fibrinolysis1995
8527028The first solvation shell of magnesium and calcium ions in a model nucleic acid environment: an ab initio study.Journal of Biomolecular Structure and Dynamics1995
7784428The first solvation shell of magnesium ion in a model protein environment with formate, water, and X-NH3, H2S, imidazole, formaldehyde, and chloride as ligands: an Ab initio study.Proteins: Structure, Function and Bioinformatics1995
1747783A simple approach for the distribution of computationally intense tasks in an heterogeneous environment: distribution of the MDPP image-processing package.Comput Appl Biosci1991
2323886Divalent metal ion mediated interaction of proteins with negatively charged membranes. A model study employing molecular mechanics.International Journal of Peptide and Protein Research1990
2281086Generation of potential structures for the G-domain of chloroplast EF-Tu using comparative molecular modeling.Proteins: Structure, Function and Bioinformatics1990
2133243Calcium ion binding to human and bovine factor X.Blood Coagulation and Fibrinolysis1990
2818858The role of hydrated divalent metal ions in the bridging of two anionic groups. An ab initio quantum chemical and molecular mechanics study of dimethyl phosphate and formate bridged by calcium and magnesium ions.Journal of Biomolecular Structure and Dynamics1989
2622904Salt or ion bridges in biological systems: a study employing quantum and molecular mechanics.Proteins: Structure, Function and Bioinformatics1989
3409460A theoretical study of the effect of methylation or ethylation at O6-guanine in the structure and energy of DNA double strands.Carcinogenesis1988
3366547Effect of calcium (II) and magnesium (II) ions on the 18-23 gamma-carboxyglutamic acid containing cyclic peptide loop of bovine prothrombin. An AMBER molecular mechanics study.International Journal of Peptide and Protein Research1988
3335547Studies on Ca(II) binding to gamma-carboxyglutamic acid. Use of thermal decarboxylation to probe metal ion/gamma-carboxyglutamic acid interactions.Journal of Biological Chemistry1988
3131340Chemical modification of bovine prothrombin fragment 1 in the presence of Tb3+ ions. Sequence studies on 3-gamma-MGlu-fragment.Journal of Biological Chemistry1988
3558405Mg(II) binding by bovine prothrombin fragment 1 via equilibrium dialysis and the relative roles of Mg(II) and Ca(II) in blood coagulation.Journal of Biological Chemistry1987
3579923Relative affinity of Ca(II) and Mg(II) ions for human and bovine prothrombin and fragment 1.Biochemical and Biophysical Research Communications1987
3578772Determination of magnesium binding to macromolecules.Analytical Biochemistry1987
3754256The effect of divalent metal ions on the electrophoretic mobility of bovine prothrombin and bovine prothrombin fragment 1.Journal of Biological Chemistry1986
3755435Chemical modification of bovine prothrombin fragment 1 in the presence of Tb3+ ions.Journal of Biological Chemistry1986
3814120Relative spectral response as a function of sequential ligand binding.Biochemical and Biophysical Research Communications1986
3818174Synthesis of a gamma-carboxyglutamic acid containing heptapeptide corresponding to bovine prothrombin residues 17-23.International Journal of Peptide and Protein Research1986
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Carnegie Mellon University
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Arizona State University
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University of Texas Health Science Center at Houston
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Children's Hospital of Philadelphia
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