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Author Details

Lee Kamentsky
Picower Institute for Learning and Memory, Massachusetts Institute of Technology
1991
16
13
PMIDPaper TitleJournal TitlePublished Year
36085649Axon Tracing and Centerline Detection using Topologically-Aware 3D U-Nets.Annu Int Conf IEEE Eng Med Biol Soc2022
35379803Brain-wide mapping reveals that engrams for a single memory are distributed across multiple brain regions.Nat Commun2022
35516811Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data.Front Neurosci2022
29969450CellProfiler 3.0: Next-generation image processing for biology.PLoS Biol2018
27594698An open-source solution for advanced imaging flow cytometry data analysis using machine learning.Methods2017
27253773QSAR-Driven Discovery of Novel Chemical Scaffolds Active against Schistosoma mansoni.J Chem Inf Model2016
27396732Discovery of New Anti-Schistosomal Hits by Integration of QSAR-Based Virtual Screening and High Content Screening.J Med Chem2016
25866969Pharmacological HIF2α inhibition improves VHL disease-associated phenotypes in zebrafish model.J Clin Invest2015
26594156Crowdsourcing the creation of image segmentation algorithms for connectomics.Front Neuroanat2015
24784529High- and low-throughput scoring of fat mass and body fat distribution in C. elegans.Methods2014
22522656An image analysis toolbox for high-throughput C. elegans assays.Nat Methods2012
22743771A call for bioimaging software usability.Nat Methods2012
21349861Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.Bioinformatics2011
9012378Methods for automatic multiparameter analysis of fluorescence in situ hybridized specimens with a laser scanning cytometer.Cytometry1997
8604571CompuCyte Corporation. Pathfinder System: computerizing the microscope to improve cytology quality assurance.Acta Cytol1996
1935453Microscope-based multiparameter laser scanning cytometer yielding data comparable to flow cytometry data.Cytometry1991
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Collaborators

Anne E Carpenter
Broad Institute of MIT and Harvard
Co-authored papers 9
Kwanghun Chung
Massachusetts Institute of Technology
Co-authored papers 2
Carolina W??hlby
Uppsala University
Co-authored papers 2
Kevin W Eliceiri
University of Wisconsin-Madison
Co-authored papers 2
Mark-Anthony Bray
Co-authored papers 2
Filippo Maria Castelli
Co-authored papers 1
Ilona Lipp
Cardiff University Brain Research Imaging Centre (CUBRIC)
Co-authored papers 1
Julien Cohen-Adad
Institute of Biomedical Engineering
Co-authored papers 1
Gustav Nilsonne
Karolinska Institutet
Co-authored papers 1
Guiomar Niso
Instituto Cajal
Co-authored papers 1
Zihan Liu
Co-authored papers 1
Polina Golland
Massachusetts Institute of Technology
Co-authored papers 1
Shantanu Singh
Co-authored papers 1
Robert Oostenveld
Donders Institute for Brain, Radboud University Nijmegen
Co-authored papers 1
Satrajit S Ghosh
Boston University, Harvard Medical School, Kent Ridge Digital Laboratories, Massachusetts Institute of Technology, National University of Singapore
Co-authored papers 1
Sylvain Takerkart
Institut de Neurosciences de la Timone (INT), CNRS, Aix-Marseille Universite
Co-authored papers 1
Srinivas C Turaga
Howard Hughes Medical Institute
Co-authored papers 1
Marie-H??l??ne Bourget
Institute of Biomedical Engineering
Co-authored papers 1
Ali R Khan
Western University
Co-authored papers 1
Giacomo Mazzamuto
National Research Council - National Institute of Optics (CNR-INO)
Co-authored papers 1
Susanne M Rafelski
Co-authored papers 1
Paule-Joanne Toussaint
Montreal Neurological Institute, McGill University
Co-authored papers 1
Yaroslav O Halchenko
Center for Open Neuroscience, Dartmouth College
Co-authored papers 1
Alberto Lazari
University of Oxford
Co-authored papers 1
Christopher J Markiewicz
Stanford University
Co-authored papers 1
Release 1.2