Skip to Main Content

Author Details

Jooyoung Lee
Korea Institute for Advanced Study
1996
88
27
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37585026Application of conformational space annealing to the protein structure modeling using cryo-EM maps.J Comput Chem2023
37585026Application of conformational space annealing to the protein structure modeling using cryo-EM maps.J Comput Chem2023
36257983Direct experimental observation of blue-light-induced conformational change and intermolecular interactions of cryptochrome.Commun Biol2022
36096036FRTpred: A novel approach for accurate prediction of protein folding rate and type.Comput Biol Med2022
35744836CRFalign: A Sequence-Structure Alignment of Proteins Based on a Combination of HMM-HMM Comparison and Conditional Random Fields.Molecules2022
36257983Direct experimental observation of blue-light-induced conformational change and intermolecular interactions of cryptochrome.Commun Biol2022
35744836CRFalign: A Sequence-Structure Alignment of Proteins Based on a Combination of HMM-HMM Comparison and Conditional Random Fields.Molecules2022
36096036FRTpred: A novel approach for accurate prediction of protein folding rate and type.Comput Biol Med2022
32244797A Coil-to-Helix Transition Serves as a Binding Motif for hSNF5 and BAF155 Interaction.Int J Mol Sci2020
32244797A Coil-to-Helix Transition Serves as a Binding Motif for hSNF5 and BAF155 Interaction.Int J Mol Sci2020
32001743Supramolecular tholos-like architecture constituted by archaeal proteins without functional annotation.Sci Rep2020
31999919Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13.J Chem Inf Model2020
32001743Supramolecular tholos-like architecture constituted by archaeal proteins without functional annotation.Sci Rep2020
31999919Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13.J Chem Inf Model2020
30500873ConDo: protein domain boundary prediction using coevolutionary information.Bioinformatics2019
30500873ConDo: protein domain boundary prediction using coevolutionary information.Bioinformatics2019
30699145Non-sequential protein structure alignment by conformational space annealing and local refinement.PLoS One2019
30689864CHARMM-GUI Glycan Modeler for modeling and simulation of carbohydrates and glycoconjugates.Glycobiology2019
31071262Exploring the Folding Mechanism of Small Proteins GB1 and LB1.J Chem Theory Comput2019
30733462PFDB: A standardized protein folding database with temperature correction.Sci Rep2019
31071262Exploring the Folding Mechanism of Small Proteins GB1 and LB1.J Chem Theory Comput2019
30733462PFDB: A standardized protein folding database with temperature correction.Sci Rep2019
30689864CHARMM-GUI Glycan Modeler for modeling and simulation of carbohydrates and glycoconjugates.Glycobiology2019
30699145Non-sequential protein structure alignment by conformational space annealing and local refinement.PLoS One2019
29159837Protein structure modeling and refinement by global optimization in CASP12.Proteins2018
28975666Methods for estimation of model accuracy in CASP12.Proteins2018
30250173Morphological Evaluation of Meta-stable Oligomers of α-Synuclein with Small-Angle Neutron Scattering.Sci Rep2018
29860162Use of the UNRES force field in template-assisted prediction of protein structures and the refinement of server models: Test with CASP12 targets.J Mol Graph Model2018
29341255Data-assisted protein structure modeling by global optimization in CASP12.Proteins2018
29122686An artificially constructed dimer through deformation of a short zinc-binding loop.Biochim Biophys Acta Proteins Proteom2018
29159837Protein structure modeling and refinement by global optimization in CASP12.Proteins2018
29775598Selective Cytotoxicity of the NAMPT Inhibitor FK866 Toward Gastric Cancer Cells With Markers of the Epithelial-Mesenchymal Transition, Due to Loss of NAPRT.Gastroenterology2018
29860162Use of the UNRES force field in template-assisted prediction of protein structures and the refinement of server models: Test with CASP12 targets.J Mol Graph Model2018
30250173Morphological Evaluation of Meta-stable Oligomers of α-Synuclein with Small-Angle Neutron Scattering.Sci Rep2018
29775598Selective Cytotoxicity of the NAMPT Inhibitor FK866 Toward Gastric Cancer Cells With Markers of the Epithelial-Mesenchymal Transition, Due to Loss of NAPRT.Gastroenterology2018
29122686An artificially constructed dimer through deformation of a short zinc-binding loop.Biochim Biophys Acta Proteins Proteom2018
29341255Data-assisted protein structure modeling by global optimization in CASP12.Proteins2018
28975666Methods for estimation of model accuracy in CASP12.Proteins2018
28548089Finding multiple reaction pathways via global optimization of action.Nat Commun2017
28548089Finding multiple reaction pathways via global optimization of action.Nat Commun2017
28419290SVMQA: support-vector-machine-based protein single-model quality assessment.Bioinformatics2017
28940211Ergodicity and model quality in template-restrained canonical and temperature/Hamiltonian replica exchange coarse-grained molecular dynamics simulations of proteins.J Comput Chem2017
28800396A Simple and Efficient Protein Structure Refinement Method.J Chem Theory Comput2017
28714967Architecture of the type IV coupling protein complex of Legionella pneumophila.Nat Microbiol2017
28398048Protein Loop Structure Prediction Using Conformational Space Annealing.J Chem Inf Model2017
28963540Inverse Resolution Limit of Partition Density and Detecting Overlapping Communities by Link-Surprise.Sci Rep2017
28398048Protein Loop Structure Prediction Using Conformational Space Annealing.J Chem Inf Model2017
28419290SVMQA: support-vector-machine-based protein single-model quality assessment.Bioinformatics2017
28940211Ergodicity and model quality in template-restrained canonical and temperature/Hamiltonian replica exchange coarse-grained molecular dynamics simulations of proteins.J Comput Chem2017
28963540Inverse Resolution Limit of Partition Density and Detecting Overlapping Communities by Link-Surprise.Sci Rep2017
  • 1 - 50 of 176

Recommended Authors

Renzhi Cao
Pacific Lutheran University
Career Start Year 2013
Number of shared co-authors 12
Juergen Haas
University of Basel
Career Start Year 2007
Number of shared co-authors 4
Jaume Bonet
Institute of Bioengineering, Ecole Polytechnique Federale de Lausanne
Career Start Year 2006
Number of shared co-authors 8
Frank DiMaio
University of Washington
Career Start Year 2006
Number of shared co-authors 14
Jinbo Xu
Toyota Technological Institute at Chicago
Career Start Year 2003
Number of shared co-authors 0
Yang Zhang
University of Michigan ann arbor
Career Start Year 2002
Number of shared co-authors 15
Hao Fan
College of Biotechnology and Bioengineering, Zhejiang University of Technology
Career Start Year 2001
Number of shared co-authors 2
Matthew P Jacobson
Department of Pharmaceutical Chemistry, University of California san francisco
Career Start Year 1999
Number of shared co-authors 6
Torsten Schwede
University of Basel
Career Start Year 1999
Number of shared co-authors 21
Jun-Tao Guo
University of North Carolina at Charlotte
Career Start Year 1999
Number of shared co-authors 0
Daron M Standley
Osaka university
Career Start Year 1998
Number of shared co-authors 41
Nikolay V Dokholyan
Pennsylvania State University College of Medicine
Career Start Year 1998
Number of shared co-authors 4
Mallur S Madhusudhan
Indian Institute of Science Education and Research Pune
Career Start Year 1996
Number of shared co-authors 2
Giorgio Colombo
Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico
Career Start Year 1993
Number of shared co-authors 0
Haim J Wolfson
Tel Aviv University
Career Start Year 1991
Number of shared co-authors 36
Carlos J Camacho
University of Pittsburgh
Career Start Year 1990
Number of shared co-authors 23
Boris Reva
Icahn School of Medicine at Mount Sinai
Career Start Year 1990
Number of shared co-authors 0
Ram Samudrala
Jacobs School of Medicine and Biomedical Sciences, University at Buffalo
Career Start Year 1990
Number of shared co-authors 2
Roland L Dunbrack
Fox Chase Cancer Center
Career Start Year 1989
Number of shared co-authors 25
Piotr Cieplak
Sanford-Burnham-Prebys Medical Discovery Institute
Career Start Year 1987
Number of shared co-authors 0
Randy J Read
Cambridge Institute for Medical Research, University of Cambridge
Career Start Year 1982
Number of shared co-authors 7
Ruben Abagyan
Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California
Career Start Year 1981
Number of shared co-authors 3
Haruki Nakamura
Institute for Protein Research, Osaka University
Career Start Year 1980
Number of shared co-authors 41
Ruth Nussinov
Sackler School of Medicine, Tel Aviv University
Career Start Year 1980
Number of shared co-authors 10
Michael J E Sternberg
Imperial College London
Career Start Year 1976
Number of shared co-authors 12
Charles L Brooks
University of Michigan ann arbor
Career Start Year 1974
Number of shared co-authors 1
John Moult
Institute for Bioscience and Biotechnology Research
Career Start Year 1970
Number of shared co-authors 8
Michael Levitt
Stanford University
Career Start Year 1969
Number of shared co-authors 12
Andras Fiser
Albert Einstein College of Medicine
Career Start Year 1968
Number of shared co-authors 6
Jens Meiler
Vanderbilt University
Career Start Year 1954
Number of shared co-authors 10

Collaborators

Keehyoung Joo
Center for Advanced Computation, Korea Institute for Advanced Study
Co-authored papers 47
Adam Liwo
Co-authored papers 10
Cezary Czaplewski
Co-authored papers 8
Harold A Scheraga
Co-authored papers 7
Paweſ Krupa
Co-authored papers 5
Magdalena A Mozolewska
Co-authored papers 5
Jong Yun Kim
Chonnam National University
Co-authored papers 5
Chaok Seok
Seoul National University
Co-authored papers 4
Sun Young Lee
Chonbuk National University Hospital
Co-authored papers 4
Agnieszka Karczyſska
Co-authored papers 3
David Baker
University of Washington
Co-authored papers 2
Jianlin Cheng
University of Missouri
Co-authored papers 2
Lim Heo
Michigan State University
Co-authored papers 2
Junsu Ko
Co-authored papers 2
Jong Young Joung
Korea Institute for Advanced Study
Co-authored papers 2
Zhiping Weng
University of Massachusetts Medical School
Co-authored papers 1
Neil J Bruce
Heidelberg Institute for Theoretical Studies (HITS)
Co-authored papers 1
Zhiwei Ma
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 1
Dmitri Beglov
Boston University
Co-authored papers 1
Jin Young Lee
Samsung Medical Center, College of Medicine, The Sungkyunkwan University of Korea
Co-authored papers 1
Liming Qiu
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 1
Artem B Mamonov
MGH/Harvard Medical School
Co-authored papers 1
Brian Jim??nez-Garc??a
Utrecht University
Co-authored papers 1
Iain H Moal
GSK Medicines Research Centre
Co-authored papers 1
Rebecca C Wade
Center for Molecular Biology (ZMBH), Heidelberg University
Co-authored papers 1
Bernard Maigret
Universite de Lorraine, CNRS
Co-authored papers 1
Gydo C P van Zundert
Utrecht University
Co-authored papers 1
Li C Xue
Utrecht University
Co-authored papers 1
Xiaoqin Zou
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 1
Ilya A Vakser
The University of Kansas
Co-authored papers 1
Release 1.2