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Author Details

Timothy L Tickle
Broad Institute
2007
31
21
PMIDPaper TitleJournal TitlePublished Year
36413377LungMAP Portal Ecosystem: Systems-level Exploration of the Lung.Am J Respir Cell Mol Biol2024
36413377LungMAP Portal Ecosystem: Systems-level Exploration of the Lung.Am J Respir Cell Mol Biol2024
36200899Toward a data infrastructure for the Plant Cell Atlas.Plant Physiol2023
36200899Toward a data infrastructure for the Plant Cell Atlas.Plant Physiol2023
37323575Targeted <i>in silico</i> characterization of fusion transcripts in tumor and normal tissues via FusionInspector.Cell Rep Methods2023
36945543Matrix and analysis metadata standards (MAMS) to facilitate harmonization and reproducibility of single-cell data.bioRxiv2023
37390046A guide to the BRAIN Initiative Cell Census Network data ecosystem.PLoS Biol2023
37323575Targeted <i>in silico</i> characterization of fusion transcripts in tumor and normal tissues via FusionInspector.Cell Rep Methods2023
37390046A guide to the BRAIN Initiative Cell Census Network data ecosystem.PLoS Biol2023
36945543Matrix and analysis metadata standards (MAMS) to facilitate harmonization and reproducibility of single-cell data.bioRxiv2023
34516542A statistical model for describing and simulating microbial community profiles.PLoS Comput Biol2021
33655247A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2.bioRxiv2021
33915569COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets.Nature2021
34516542A statistical model for describing and simulating microbial community profiles.PLoS Comput Biol2021
34784344Multivariable association discovery in population-scale meta-omics studies.PLoS Comput Biol2021
34588693Blood and immune development in human fetal bone marrow and Down syndrome.Nature2021
35072136GA4GH: International policies and standards for data sharing across genomic research and healthcare.Cell Genom2021
33655247A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2.bioRxiv2021
33915569COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets.Nature2021
35072136GA4GH: International policies and standards for data sharing across genomic research and healthcare.Cell Genom2021
34588693Blood and immune development in human fetal bone marrow and Down syndrome.Nature2021
34784344Multivariable association discovery in population-scale meta-omics studies.PLoS Comput Biol2021
32304633Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes.Immunity2020
32304633Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes.Immunity2020
32719530Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq.Nat Methods2020
32719530Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq.Nat Methods2020
31597962Decoding human fetal liver haematopoiesis.Nature2019
31597962Decoding human fetal liver haematopoiesis.Nature2019
28902842The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation.Nature2017
28902842The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation.Nature2017
29143821Erratum: The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation.Nature2017
29247187Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer.Sci Rep2017
28099853A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors.Cell Rep2017
28099853A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors.Cell Rep2017
29247187Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer.Sci Rep2017
29143821Erratum: The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation.Nature2017
26884067Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes.Genome Med2016
26884067Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes.Genome Med2016
25729854Corrigendum. Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature.J Clin Invest2015
25887922Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease.Genome Biol2015
25732063Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque.Cell Host Microbe2015
25729854Corrigendum. Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature.J Clin Invest2015
26418763MetaPhlAn2 for enhanced metagenomic taxonomic profiling.Nat Methods2015
26157614Compact graphical representation of phylogenetic data and metadata with GraPhlAn.PeerJ2015
26418763MetaPhlAn2 for enhanced metagenomic taxonomic profiling.Nat Methods2015
26157614Compact graphical representation of phylogenetic data and metadata with GraPhlAn.PeerJ2015
25887922Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease.Genome Biol2015
25732063Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque.Cell Host Microbe2015
24500617Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission.ISME J2014
24500617Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission.ISME J2014
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Collaborators

Curtis Huttenhower
Broad Institute of MIT and Harvard
Co-authored papers 14
Aviv Regev
Broad Institute of MIT and Harvard
Co-authored papers 11
Orit Rozenblatt-Rosen
Co-authored papers 8
Michal Slyper
Co-authored papers 6
Orr Ashenberg
Co-authored papers 6
Ramnik J Xavier
Broad Institute of MIT and Harvard
Co-authored papers 5
Nicola Segata
University of Trento
Co-authored papers 5
Danielle Dionne
Co-authored papers 5
Brian J Haas
Broad Institute of MIT and Harvard
Co-authored papers 4
Bo Li
Co-authored papers 4
Alexandra-Chloé Villani
Co-authored papers 4
Nir Hacohen
Broad Institute of MIT and Harvard
Co-authored papers 3
Sarah A Teichmann
Wellcome Sanger Institute
Co-authored papers 3
Bruce J Aronow
Cincinnati Children's Hospital Medical Center
Co-authored papers 3
Ayshwarya Subramanian
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Co-authored papers 3
Levi Waldron
City University of New York School of Public Health
Co-authored papers 3
Joshua Gould
Co-authored papers 3
Alex K Shalek
Institute for Medical Engineering & Science, Massachusetts Institute of Technology
Co-authored papers 2
Mi-Ok Kim
University of California san francisco
Co-authored papers 2
Daniel Schnell
Co-authored papers 2
Ioannis S Vlachos
Harvard Medical School
Co-authored papers 2
Mehrtash Babadi
Co-authored papers 2
Andrea Ganna
Institute for Molecular Medicine Finland (FIMM), University of Helsinki
Co-authored papers 2
Jesse M Engreitz
Co-authored papers 2
Heather Huot Creasy
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 2
Benedict Paten
UC Santa Cruz Genomics Institute, University of California
Co-authored papers 2
Ellen Todres
Co-authored papers 2
Laura Jardine
Co-authored papers 2
Steven Gazal
Co-authored papers 2
Winston Hide
Harvard Medical School
Co-authored papers 2
Release 1.2