Author details

Full Name

Hilmar Lapp

Affiliation

Duke University

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35186448	A new phylogenetic data standard for computable clade definitions: the Phyloreference Exchange Format (Phyx).	PeerJ	2022
35285502	Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies.	Syst Biol	2022
31596473	A Logical Model of Homology for Comparative Biology.	Syst Biol	2020
32285015	Erratum: Publisher Correction: Application programming interfaces for knowledge transfer and generation in the life sciences and healthcare.	NPJ Digit Med	2020
32140567	Application programming interfaces for knowledge transfer and generation in the life sciences and healthcare.	NPJ Digit Med	2020
29605182	Divergence in DNA Specificity among Paralogous Transcription Factors Contributes to Their Differential InÂ Vivo Binding.	Cell Syst	2018
30210780	The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018).	F1000Res	2018
30576485	Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.	Database (Oxford)	2018
27417145	apex: phylogenetics with multiple genes.	Mol Ecol Resour	2017
29118973	The 2017 Bioinformatics Open Source Conference (BOSC).	F1000Res	2017
27860406	Towards an integrated ecosystem of R packages for the analysis of population genetic data.	Mol Ecol Resour	2017
27297607	Developing educational resources for population genetics in R: an open and collaborative approach.	Mol Ecol Resour	2017
26870952	Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals.	PLoS One	2016
26500251	Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes.	Mol Biol Evol	2016
27781083	The 2016 Bioinformatics Open Source Conference (BOSC).	F1000Res	2016
26914653	The 2015 Bioinformatics Open Source Conference (BOSC 2015).	PLoS Comput Biol	2016
26776180	INVESTIGATING THE IMPORTANCE OF ANATOMICAL HOMOLOGY FOR CROSS-SPECIES PHENOTYPE COMPARISONS USING SEMANTIC SIMILARITY. Accepted at Pacific Symposium on Biocomputing, 2016.	Pac Symp Biocomput	2016
25024288	The Bioinformatics Open Source Conference (BOSC) 2013.	Bioinformatics	2015
26220875	Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution.	Genesis	2015
25972520	Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy.	Database (Oxford)	2015
26018570	Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies.	Syst Biol	2015
25562316	Finding our way through phenotypes.	PLoS Biol	2015
24495517	BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.	J Biomed Semantics	2014
25411634	Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex.	J Biomed Semantics	2014
23335860	Science incubators: synthesis centers and their role in the research ecosystem.	PLoS Biol	2013
24127438	What is an anatomy ontology?	Anat Rec (Hoboken)	2013
24267744	The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes.	J Biomed Semantics	2013
23668630	Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.	BMC Bioinformatics	2013
22357728	NeXML: rich, extensible, and verifiable representation of comparative data and metadata.	Syst Biol	2012
23451294	RCN4GSC Workshop Report: Managing Data at the Interface of Biodiversity and (Meta)Genomics, March 2011.	Stand Genomic Sci	2012
23251424	A unified anatomy ontology of the vertebrate skeletal system.	PLoS One	2012
22736877	500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton.	J Appl Ichthyol	2012
21700574	Overview of FEED, the feeding experiments end-user database.	Integr Comp Biol	2011
22120662	The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data.	Database (Oxford)	2011
19895550	Linking big: the continuing promise of evolutionary synthesis.	Evolution	2010
21698066	The Primate Life History Database: A unique shared ecological data resource.	Methods Ecol Evol	2010
21304729	Meeting Report: BioSharing at ISMB 2010.	Stand Genomic Sci	2010
20727200	The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.	J Biomed Semantics	2010
20547776	The teleost anatomy ontology: anatomical representation for the genomics age.	Syst Biol	2010
20505755	Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature.	PLoS One	2010
20463926	Phenex: ontological annotation of phenotypic diversity.	PLoS One	2010
16596450	Data and animal management software for large-scale phenotype screening.	Mamm Genome	2006
16899494	Open source tools and toolkits for bioinformatics: significance, and where are we?	Brief Bioinform	2006
15944222	Large-scale profiling of Rab GTPase trafficking networks: the membrome.	Mol Biol Cell	2005
16473572	Exploring trafficking GTPase function by mRNA expression profiling: use of the SymAtlas web-application and the Membrome datasets.	Methods Enzymol	2005
15060018	Applications of a rat multiple tissue gene expression data set.	Genome Res	2004
15075390	A gene atlas of the mouse and human protein-encoding transcriptomes.	Proc Natl Acad Sci U S A	2004
12368254	The Bioperl toolkit: Perl modules for the life sciences.	Genome Res	2002
11606367	Molecular classification of human carcinomas by use of gene expression signatures.	Cancer Res	2001
10977065	Robust parametric and semi-parametric spot fitting for spot array images.	Proc Int Conf Intell Syst Mol Biol	2000

1 - 50 of 50

Salvador Capella-Gutierrez

Spanish National Bioinformatics Institute (INB/ELIXIR-ES)

Career Start Year 2009

Number of shared co-authors 11

Nuno A Fonseca

European Bioinformatics Institute

Career Start Year 2008

Number of shared co-authors 4

Christophe Dessimoz

University of Lausanne

Career Start Year 2005

Number of shared co-authors 11

Anne Niknejad

University of Lausanne

Career Start Year 2004

Number of shared co-authors 15

James Taylor

Johns Hopkins University

Career Start Year 2004

Number of shared co-authors 22

Justin Paschall

National Human Genome Research Institute, National Institutes of Health

Career Start Year 2004

Number of shared co-authors 6

Don Gilbert

Indiana University

Career Start Year 2002

Number of shared co-authors 1

Tyler Alioto

Universitat de Barcelona (UB)

Career Start Year 2001

Number of shared co-authors 2

Rajkumar Sasidharan

University of California los angeles

Career Start Year 2000

Number of shared co-authors 7

Tony Burdett

European Bioinformatics Institute

Career Start Year 2000

Number of shared co-authors 21

Josep F Abril

University of Barcelona

Career Start Year 2000

Number of shared co-authors 6

Kim Rutherford

University of Cambridge

Career Start Year 2000

Number of shared co-authors 21

C Titus Brown

University of California davis

Career Start Year 1999

Number of shared co-authors 10

Nicola Mulder

University of Cape Town

Career Start Year 1999

Number of shared co-authors 26

Fabien Campagne

Weill Cornell Medical College

Career Start Year 1998

Number of shared co-authors 1

Anton Nekrutenko

The Pennsylvania State University, University Park

Career Start Year 1998

Number of shared co-authors 6

Katherine Wolstencroft

Leiden Institute of Advanced Computer Science, Leiden University

Career Start Year 1997

Number of shared co-authors 19

Nirav Merchant

Data Science Institute, University of Arizona

Career Start Year 1995

Number of shared co-authors 3

Mark Yandell

University of Utah

Career Start Year 1994

Number of shared co-authors 12

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 8

Bonnie Berger

Massachusetts Institute of Technology

Career Start Year 1994

Number of shared co-authors 3

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 26

Erik L L Sonnhammer

Stockholm University

Career Start Year 1992

Number of shared co-authors 6

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 10

Winston Hide

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 24

Justin T Reese

Lawrence Berkeley National Laboratory

Career Start Year 1985

Number of shared co-authors 14

Martin Kuiper

Norwegian University of Science and Technology

Career Start Year 1983

Number of shared co-authors 18

John M Hancock

the University of Texas Health Science Center at Houston

Career Start Year 1982

Number of shared co-authors 30

Stuart Aitken

Queensland Children's Hospital

Career Start Year 1982

Number of shared co-authors 5

Richard Durbin

University of Cambridge

Career Start Year 1964

Number of shared co-authors 19

row(s) 1 - 30 of 30

James P Balhoff

Renaissance Computing Institute, University of North Carolina

Co-authored papers 18

Paula M Mabee

University of South Dakota

Co-authored papers 17

Todd J Vision

University of North Carolina

Co-authored papers 13

Wasila M Dahdul

University of California irvine

Co-authored papers 13

Peter E Midford

University of Kansas

Co-authored papers 8

John G Lundberg

Academy of Natural Sciences of Philadelphia and Drexel University (ANSP)

Co-authored papers 7

Monte Westerfield

Institute of Neuroscience, University of Oregon

Co-authored papers 7

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 7

Peter J A Cock

James Hutton Institute

Co-authored papers 6

Thomas A Dececchi

Mount Marty University

Co-authored papers 6

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 5

Brad A Chapman

Harvard T.H. Chan School of Public Health

Co-authored papers 5

Nomi L Harris

Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University

Co-authored papers 5

Melissa A Haendel

Co-authored papers 5

Christopher J Fields

University of Illinois Urbana-Champaign

Co-authored papers 4