Author details

Full Name

Amy-Joan L Ham

Affiliation

ORCID

Career Start Year

1995

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
24252090	SIRT3 deacetylates ATP synthase F1 complex proteins in response to nutrient- and exercise-induced stress.	Antioxidants and Redox Signaling	2014
23161513	Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.	Molecular and Cellular Proteomics	2013
23879310	IDPQuantify: combining precursor intensity with spectral counts for protein and peptide quantification.	J Proteome Res	2013
22211352	A new LC-MS/MS method for the quantification of endogenous and vinyl chloride-induced 7-(2-Oxoethyl)guanine in sprague-dawley rats.	Chemical Research in Toxicology	2012
22530795	Precision of multiple reaction monitoring mass spectrometry analysis of formalin-fixed, paraffin-embedded tissue.	Journal of Proteome Research	2012
22944598	Proteomic profiling of paraffin-embedded samples identifies metaplasia-specific and early-stage gastric cancer biomarkers.	Am J Pathol	2012
22559222	Label-free quantitation of protein modifications by pseudo selected reaction monitoring with internal reference peptides.	J Proteome Res	2012
22217208	Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment.	J Proteome Res	2012
21686255	Rab11-FIP2 influences multiple components of the endosomal system in polarized MDCK cells.	Cellular Logistics	2011
21098488	Geometric restraint drives on- and off-pathway catalysis by the Escherichia coli menaquinol:fumarate reductase.	Journal of Biological Chemistry	2011
21357624	Methods for peptide and protein quantitation by liquid chromatography-multiple reaction monitoring mass spectrometry.	Mol Cell Proteomics	2011
21520941	ScanRanker: Quality assessment of tandem mass spectra via sequence tagging.	J Proteome Res	2011
21499296	Phosphoproteomic mass spectrometry profiling links Src family kinases to escape from HER2 tyrosine kinase inhibition.	Oncogene	2011
21965817	Supporting tool suite for production proteomics.		2011
21876773	IQGAP1 is a novel CXCR2-interacting protein and essential component of the "chemosynapse".	PLoS ONE	2011
22028617	Elucidating the mechanism of regulation of transforming growth factor Î² Type II receptor expression in human lung cancer cell lines.	Neoplasia	2011
19858499	Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.	Mol Cell Proteomics	2010
20131910	TagRecon: high-throughput mutation identification through sequence tagging.	J Proteome Res	2010
19837981	Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses.	Mol Cell Proteomics	2010
20124353	Identification and validation of novel spinophilin-associated proteins in rodent striatum using an enhanced ex vivo shotgun proteomics approach.	Mol Cell Proteomics	2010
19921851	Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry.	J Proteome Res	2010
19876013	Spin filter-based sample preparation for shotgun proteomics.	Nature Methods	2009
19446732	Characterization of chemokine receptor CXCR2 interacting proteins using a proteomics approach to define the CXCR2 "chemosynapse".	Methods in Enzymology	2009
19088383	Identification of regulatory phosphorylation sites in a cell volume- and Ste20 kinase-dependent ClC anion channel.	Journal of General Physiology	2009
19435808	VASP is a CXCR2-interacting protein that regulates CXCR2-mediated polarization and chemotaxis.	Journal of Cell Science	2009
19729652	A sulfilimine bond identified in collagen IV.	Science	2009
19073175	Microtubule-dependent association of AKAP350A and CCAR1 with RNA stress granules.	Experimental Cell Research	2009
19561596	Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma.	Nat Biotechnol	2009
19799863	Eto2/MTG16 and MTGR1 are heteromeric corepressors of the TAL1/SCL transcription factor in murine erythroid progenitors.	Biochemical and Biophysical Research Communications	2009
18630943	DirecTag: accurate sequence tags from peptide MS/MS through statistical scoring.	Journal of Proteome Research	2008
20107526	Prostate cancer serum biomarker discovery through proteomic analysis of alpha-2 macroglobulin protein complexes.	Proteomics - Clinical Applications	2008
18387945	Identification and functional analysis of phosphorylated tyrosine residues within EphA2 receptor tyrosine kinase.	Journal of Biological Chemistry	2008
18939861	Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry.	Journal of Proteome Research	2008
18563927	Global impact of oncogenic Src on a phosphotyrosine proteome.	Journal of Proteome Research	2008
18504258	Use of fluorescence-activated vesicle sorting for isolation of Naked2-associated, basolaterally targeted exocytic vesicles for proteomics analysis.	Molecular and Cellular Proteomics	2008
18374270	Propagation of protein glycation damage involves modification of tryptophan residues via reactive oxygen species: inhibition by pyridoxamine.	Free Radical Biology and Medicine	2008
18281375	Four and a half LIM protein 1: a partner for KCNA5 in human atrium.	Cardiovascular Research	2008
18499662	A role for collagen IV cross-links in conferring immune privilege to the Goodpasture autoantigen: structural basis for the crypticity of B cell epitopes.	Journal of Biological Chemistry	2008
18455987	A dynamic pathway for calcium-independent activation of CaMKII by methionine oxidation.	Cell	2008
18729074	Identification of novel Smad2 and Smad3 associated proteins in response to TGF-beta1.	Journal of Cellular Biochemistry	2008
17298034	Quinone-induced enhancement of DNA cleavage by human topoisomerase IIalpha: adduction of cysteine residues 392 and 405.	Biochemistry	2007
17845021	Proteome of murine jejunal brush border membrane vesicles.	J Proteome Res	2007
17311913	The selenium-rich C-terminal domain of mouse selenoprotein P is necessary for the supply of selenium to brain and testis but not for the maintenance of whole body selenium.	J Biol Chem	2007
17638878	Cyclin-dependent kinase 2 dependent phosphorylation of ATRIP regulates the G2-M checkpoint response to DNA damage.	Cancer Research	2007
17892266	Identification of the protein targets of the reactive metabolite of teucrin A in vivo in the rat.	Chemical Research in Toxicology	2007
17635917	Identification of a novel isoform of microsomal triglyceride transfer protein.	Journal of Biological Chemistry	2007
17255364	Characterization of immunoisolated human gastric parietal cells tubulovesicles: identification of regulators of apical recycling.	American Journal of Physiology - Gastrointestinal and Liver Physiology	2007
16522797	Identification of phosphorylation sites in glycine N-methyltransferase from rat liver.	Protein Sci	2006
17406459	Verification of automated peptide identifications from proteomic tandem mass spectra.		2006
16914683	Scaffolding protein INAD regulates deactivation of vision by promoting phosphorylation of transient receptor potential by eye protein kinase C in Drosophila.	Journal of Neuroscience	2006