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Author Details

Brian P Brunk
University of Pennsylvania
1989
46
32
PMIDPaper TitleJournal TitlePublished Year
34718728VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center.Nucleic Acids Res2022
29106667MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments.Nucleic Acids Res2018
27903906EuPathDB: the eukaryotic pathogen genomics database resource.Nucleic Acids Res2017
27105845Companion: a web server for annotation and analysis of parasite genomes.Nucleic Acids Res2016
26738725Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes.Nat Commun2016
25573919RNA-Rocket: an RNA-Seq analysis resource for infectious disease research.Bioinformatics2015
25867681A large-scale proteogenomics study of apicomplexan pathogens-Toxoplasma gondii and Neospora caninum.Proteomics2015
23175615EuPathDB: the eukaryotic pathogen database.Nucleic Acids Res2013
22116062GeneDB--an annotation database for pathogens.Nucleic Acids Res2012
22457617Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy.PLoS Pathog2012
22064857FungiDB: an integrated functional genomics database for fungi.Nucleic Acids Res2012
20974635AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species.Nucleic Acids Res2011
21775302Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).Bioinformatics2011
21901743Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups.Curr Protoc Bioinformatics2011
21705364The Strategies WDK: a graphical search interface and web development kit for functional genomics databases.Database (Oxford)2011
19843604TriTrypDB: a functional genomic resource for the Trypanosomatidae.Nucleic Acids Res2010
19914931EuPathDB: a portal to eukaryotic pathogen databases.Nucleic Acids Res2010
18957442PlasmoDB: a functional genomic database for malaria parasites.Nucleic Acids Res2009
18824479GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis.Nucleic Acids Res2009
18003657ToxoDB: an integrated Toxoplasma gondii database resource.Nucleic Acids Res2008
18974779HFR1 is crucial for transcriptome regulation in the cryptochrome 1-mediated early response to blue light in Arabidopsis thaliana.PLoS One2008
18644147The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation.Genome Biol2008
16964442Identification of candidate maternal-effect genes through comparison of multiple microarray data sets.Mamm Genome2006
12519984PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data.Nucleic Acids Res2003
12620126Integrating computationally assembled mouse transcript sequences with the Mouse Genome Informatics (MGI) database.Genome Biol2003
12618375Gene discovery in the apicomplexa as revealed by EST sequencing and assembly of a comparative gene database.Genome Res2003
11752262PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished).Nucleic Acids Res2002
12368860The Plasmodium genome database.Nature2002
12226475A molecular profile of a hematopoietic stem cell niche.Proc Natl Acad Sci U S A2002
12090816Gene expression profile for schizophrenia: discrete neuron transcription patterns in the entorhinal cortex.Arch Gen Psychiatry2002
11932249Predicting gene ontology functions from ProDom and CDD protein domains.Genome Res2002
11591652High-resolution BAC-based map of the central portion of mouse chromosome 5.Genome Res2001
11301298A relational schema for both array-based and SAGE gene expression experiments.Bioinformatics2001
10834841The genetic program of hematopoietic stem cells.Science2000
9847180EpoDB: a prototype database for the analysis of genes expressed during vertebrate erythropoiesis.Nucleic Acids Res1999
10457014Sonic hedgehog controls epaxial muscle determination through Myf5 activation.Development1999
10705436bioWidgets: data interaction components for genomics.Bioinformatics1999
9445484Gene discovery by EST sequencing in Toxoplasma gondii reveals sequences restricted to the Apicomplexa.Genome Res1998
9399855EpoDB: a database of genes expressed during vertebrate erythropoiesis.Nucleic Acids Res1998
8806826Regulated demethylation of the myoD distal enhancer during skeletal myogenesis.Dev Biol1996
7720572Embryonic activation of the myoD gene is regulated by a highly conserved distal control element.Development1995
1905661Molecular genetics of the Posterior sex combs/Suppressor 2 of zeste region of Drosophila: aberrant expression of the Suppressor 2 of zeste gene results in abnormal bristle development.Genetics1991
2057369The sequence of the Drosophila regulatory gene Suppressor two of zeste.Nucleic Acids Res1991
1833647Drosophila genes Posterior Sex Combs and Suppressor two of zeste encode proteins with homology to the murine bmi-1 oncogene.Nature1991
1968409Aristapedioid: a gain of function, homeotic mutation in Drosophila melanogaster.Genetics1990
2500288Genetic interactions of the suppressor 2 of zeste region genes.Dev Genet1989
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Collaborators

Christian J Stoeckert
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 25
David S Roos
University of Pennsylvania
Co-authored papers 23
Jessica C Kissinger
University of Georgia
Co-authored papers 17
Bindu Gajria
University of Pennsylvania
Co-authored papers 11
John Brestelli
University of Pennsylvania
Co-authored papers 11
Deborah F Pinney
University of Pennsylvania
Co-authored papers 10
Gregory R Grant
Perelman School of Medicine, University of Pennsylvania Philadelphia
Co-authored papers 10
Jonathan Schug
University of Pennsylvania Perelman School of Medicine
Co-authored papers 7
Jonathan Crabtree
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 6
Christiane Hertz-Fowler
Institute of Integrative Biology, University of Liverpool
Co-authored papers 5
Matthew Berriman
Wellcome Sanger Institute
Co-authored papers 4
Li Li
Center for Bioinformatics, University of Pennsylvania
Co-authored papers 4
Amit Bahl
University Hospitals Bristol and Weston NHS Foundation Trust
Co-authored papers 4
John A Miller
Co-authored papers 4
Martin Fraunholz
Julius-Maximilians-Universitat Wurzburg
Co-authored papers 3
Arthur J Milgram
Co-authored papers 3
Dinesh Gupta
International Centre for Genetic Engineering and Biotechnology (ICGEB)
Co-authored papers 3
Philip Labo
Co-authored papers 3
Charles P Emerson
Co-authored papers 3
Sharon J Diskin
Children's Hospital of Philadelphia
Co-authored papers 3
Angel Pizarro
The Institute for Translational Medicine and Therapeutics, University of Pennsylvania
Co-authored papers 2
Jie Zheng
University of Pennsylvania Perelman School of Medicine
Co-authored papers 2
Sascha Steinbiss
Wellcome Sanger Institute
Co-authored papers 2
Matthew D Mailman
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 2
Shannon K McWeeney
Oregon Health & Science University, University of California Berkeley
Co-authored papers 2
Hagai Ginsburg
The Alexander Silberman Institute of Life Science, Hebrew University of Jerusalem
Co-authored papers 2
Peter J Myler
University of Guelph
Co-authored papers 2
Dhanasekaran Shanmugam
CSIR - National Chemical Laboratory
Co-authored papers 2
Fidel Salas
University of Pennsylvania School of Medicine, Clinical Research Building
Co-authored papers 2
Kateri A Moore
Co-authored papers 2
Release 1.2