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Author Details

Ilya Shmulevich
Institute for Systems Biology
2001
139
49
PMIDPaper TitleJournal TitlePublished Year
36832685Characterizing the Impact of Communication on Cellular and Collective Behavior Using a Three-Dimensional Multiscale Cellular Model.Entropy (Basel)2023
36832685Characterizing the Impact of Communication on Cellular and Collective Behavior Using a Three-Dimensional Multiscale Cellular Model.Entropy (Basel)2023
37023084Computational capabilities of a multicellular reservoir computing system.PLoS One2023
37023084Computational capabilities of a multicellular reservoir computing system.PLoS One2023
35045296A functional module states framework reveals transcriptional states for drug and target prediction.Cell Rep2022
36093045Probabilistic boolean networks predict transcription factor targets to induce transdifferentiation.iScience2022
36008000Evolution of biomarker research in autoimmunity conditions for health professionals and clinical practice.Prog Mol Biol Transl Sci2022
36274654Exploring approaches for predictive cancer patient digital twins: Opportunities for collaboration and innovation.Front Digit Health2022
35538224Synthetic lethal kinases in Ras/p53 mutant squamous cell carcinoma.Oncogene2022
35045296A functional module states framework reveals transcriptional states for drug and target prediction.Cell Rep2022
35538224Synthetic lethal kinases in Ras/p53 mutant squamous cell carcinoma.Oncogene2022
36274654Exploring approaches for predictive cancer patient digital twins: Opportunities for collaboration and innovation.Front Digit Health2022
36093045Probabilistic boolean networks predict transcription factor targets to induce transdifferentiation.iScience2022
36008000Evolution of biomarker research in autoimmunity conditions for health professionals and clinical practice.Prog Mol Biol Transl Sci2022
33451982A CRISPR/Cas9-Engineered <i>ARID1A</i>-Deficient Human Gastric Cancer Organoid Model Reveals Essential and Nonessential Modes of Oncogenic Transformation.Cancer Discov2021
33451982A CRISPR/Cas9-Engineered <i>ARID1A</i>-Deficient Human Gastric Cancer Organoid Model Reveals Essential and Nonessential Modes of Oncogenic Transformation.Cancer Discov2021
34133939Intricate Genetic Programs Controlling Dormancy in Mycobacterium tuberculosis.Cell Rep2021
34185678NCI Imaging Data Commons.Cancer Res2021
34512714Patient-Specific Cell Communication Networks Associate With Disease Progression in Cancer.Front Genet2021
34824458Digital twins for predictive oncology will be a paradigm shift for precision cancer care.Nat Med2021
34824458Digital twins for predictive oncology will be a paradigm shift for precision cancer care.Nat Med2021
34512714Patient-Specific Cell Communication Networks Associate With Disease Progression in Cancer.Front Genet2021
34185678NCI Imaging Data Commons.Cancer Res2021
34133939Intricate Genetic Programs Controlling Dormancy in Mycobacterium tuberculosis.Cell Rep2021
32348771Intricate Genetic Programs Controlling Dormancy in Mycobacterium tuberculosis.Cell Rep2020
32348771Intricate Genetic Programs Controlling Dormancy in Mycobacterium tuberculosis.Cell Rep2020
32101723The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View.Trends Cancer2020
33149122Discovery of driver non-coding splice-site-creating mutations in cancer.Nat Commun2020
32696951A generalizable data-driven multicellular model of pancreatic ductal adenocarcinoma.Gigascience2020
33214875CRI iAtlas: an interactive portal for immuno-oncology research.F1000Res2020
32101723The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View.Trends Cancer2020
33214875CRI iAtlas: an interactive portal for immuno-oncology research.F1000Res2020
33149122Discovery of driver non-coding splice-site-creating mutations in cancer.Nat Commun2020
32696951A generalizable data-driven multicellular model of pancreatic ductal adenocarcinoma.Gigascience2020
30833390Genomic and molecular characterization of preterm birth.Proc Natl Acad Sci U S A2019
31743345ADAPTS: Automated deconvolution augmentation of profiles for tissue specific cells.PLoS One2019
31433971The Immune Landscape of Cancer.Immunity2019
30833390Genomic and molecular characterization of preterm birth.Proc Natl Acad Sci U S A2019
31743345ADAPTS: Automated deconvolution augmentation of profiles for tissue specific cells.PLoS One2019
31433971The Immune Landscape of Cancer.Immunity2019
29625050Oncogenic Signaling Pathways in The Cancer Genome Atlas.Cell2018
33266678Flexibility of Boolean Network Reservoir Computers in Approximating Arbitrary Recursive and Non-Recursive Binary Filters.Entropy (Basel)2018
30401823Epigenetic profiling for the molecular classification of metastatic brain tumors.Nat Commun2018
29906914Emergence of diversity in homogeneous coupled Boolean networks.Phys Rev E2018
29625052Pathogenic Germline Variants in 10,389 Adult Cancers.Cell2018
29625050Oncogenic Signaling Pathways in The Cancer Genome Atlas.Cell2018
29565975Cell death as a trigger for morphogenesis.PLoS One2018
29617666Systematic Analysis of Splice-Site-Creating Mutations in Cancer.Cell Rep2018
29617664Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas.Cell Rep2018
29617662Driver Fusions and Their Implications in the Development and Treatment of Human Cancers.Cell Rep2018
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Collaborators

Wei Zhang
The University of Texas MD Anderson Cancer Center
Co-authored papers 25
Theo A Knijnenburg
Allen Institute for Cell Science
Co-authored papers 19
Matti Nykter
Prostate Cancer Research Center, Tampere University and Tays Cancer Center
Co-authored papers 17
David L Gibbs
Institute for Systems Biology
Co-authored papers 12
Brady Bernard
Co-authored papers 11
Anil K Sood
The University of Texas MD Anderson Cancer Center
Co-authored papers 11
Limei Hu
Aier Eye Hospital of Wuhan University
Co-authored papers 11
Da Yang
Co-authored papers 10
David Cogdell
The University of Texas MD Anderson Cancer Center
Co-authored papers 9
Yuexin Liu
The University of Texas MD Anderson Cancer Center
Co-authored papers 9
Sheila M Reynolds
Institute for Systems Biology
Co-authored papers 9
Vesteinn Thorsson
Institute for Systems Biology
Co-authored papers 9
Alan Aderem
Seattle Children's Research Institute
Co-authored papers 8
Li Ding
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 8
Gregory N Fuller
MD Anderson Cancer Center
Co-authored papers 8
John D Aitchison
Center for Global Infectious Disease Research, Seattle Children's Research Institute
Co-authored papers 7
Stephen A Ramsey
Oregon State University
Co-authored papers 7
Gordon B Mills
Knight Cancer Institute, Oregon Health and Sciences University
Co-authored papers 6
Alexander J Lazar
The University of Texas MD Anderson Cancer Center
Co-authored papers 5
Andrew D Cherniack
Dana-Farber Cancer Institute
Co-authored papers 5
John N Weinstein
The University of Texas MD Anderson Cancer Center
Co-authored papers 5
Varsha Dhankani
Institute for Systems Biology
Co-authored papers 5
Peter W Laird
Van Andel Institute
Co-authored papers 5
Nathan D Price
Institute for Systems Biology
Co-authored papers 5
Richard Kreisberg
Co-authored papers 5
Raphael E Pollock
James Cancer Center, The Ohio State University
Co-authored papers 4
Raju Kucherlapati
Harvard Medical School
Co-authored papers 4
Feng Chen
Washington University in St Louis
Co-authored papers 4
Chris Sander
Broad Institute of MIT and Harvard
Co-authored papers 4
Ken Chen
University of Texas MD Anderson Cancer Center
Co-authored papers 4
Release 1.2