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Author Details

Daniel Kahn
1977
83
43
PMIDPaper TitleJournal TitlePublished Year
37495581Cysteines 1078 and 2991 cross-linking plays a critical role in redox regulation of cardiac ryanodine receptor (RyR).2023
34517214Presenilin 1 is a direct regulator of the cardiac sarco/endoplasmic reticulum calcium pump.Cell Calcium2021
32946770Dimerization of SERCA2a Enhances Transport Rate and Improves Energetic Efficiency in Living Cells.Biophysical Journal2020
32980662The functional significance of redox-mediated intersubunit cross-linking in regulation of human type 2 ryanodine receptor.Redox Biology2020
30901276Novel approach for quantification of endoplasmic reticulum Ca<sup>2+</sup> transport.Am J Physiol Heart Circ Physiol2019
28228535Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants.Plant Physiol2017
26964738Genome-wide analysis identifies gain and loss/change of function within the small multigenic insecticidal Albumin 1 family of Medicago truncatula.BMC Plant Biology2016
25428371The InterPro protein families database: the classification resource after 15 years.Nucleic Acids Res2015
23229063On the identifiability of metabolic network models.Journal of Mathematical Biology2013
22138386Importance of metabolic coupling for the dynamics of gene expression following a diauxic shift in Escherichia coli.Journal of Theoretical Biology2012
22368255High-quality sequence clustering guided by network topology and multiple alignment likelihood.2012
22096229InterPro in 2011: new developments in the family and domain prediction database.Nucleic Acids Res2012
21685069Identification of metabolic network models from incomplete high-throughput datasets.2011
20548959The carbon assimilation network in Escherichia coli is densely connected and largely sign-determined by directions of metabolic fluxes.PLoS Computational Biology2010
20485561The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution.PLoS Genetics2010
18940856InterPro: the integrative protein signature database.Nucleic Acids Res2009
19218282Differential retention of metabolic genes following whole-genome duplication.Molecular Biology and Evolution2009
18086477An environmental perspective on metabolism.Journal of Theoretical Biology2008
17202162New developments in the InterPro database.Nucleic Acids Res2007
16986316Evolutionary changes of metabolic networks and their biosynthetic capacities.2006
16986317Hierarchy of metabolic compounds based on their synthesising capacity.2006
15608177InterPro, progress and status in 2005.Nucleic Acids Res2005
15608179The ProDom database of protein domain families: more emphasis on 3D.Nucleic Acids Research2005
15000396Global changes in gene expression in Sinorhizobium meliloti 1021 under microoxic and symbiotic conditions.Molecular Plant-Microbe Interactions2004
15556707Nitrogen regulation in Sinorhizobium meliloti probed with whole genome arrays.FEMS Microbiology Letters2004
15496914Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype.Nature2004
15263897Genetic regulation of biological nitrogen fixation.Nature Reviews Microbiology2004
15256575FixJ-regulated genes evolved through promoter duplication in Sinorhizobium meliloti.Microbiology (United Kingdom)2004
14602924Enzyme-specific profiles for genome annotation: PRIAM.Nucleic Acids Research2003
12520011The InterPro Database, 2003 brings increased coverage and new features.Nucleic Acids Res2003
12571049Development of Sinorhizobium meliloti pilot macroarrays for transcriptome analysis.Applied and Environmental Microbiology2003
12062434Two distinct classes of FixJ binding sites defined by in vitro selection.FEBS Letters2002
12230033ProDom: automated clustering of homologous domains.Briefings in Bioinformatics2002
12230031InterPro: an integrated documentation resource for protein families, domains and functional sites.Brief Bioinform2002
12381845Molecular dynamics of the FixJ receiver domain: movement of the beta4-alpha4 loop correlates with the in and out flip of Phe101.Protein Science2002
12490726Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis.Nucleic Acids Research2002
11125043The InterPro database, an integrated documentation resource for protein families, domains and functional sites.Nucleic Acids Res2001
11474104The composite genome of the legume symbiont Sinorhizobium meliloti.Science2001
11404084New members of the Drosophila Myc transcription factor subfamily revealed by a genome-wide examination for basic helix-loop-helix genes.Mechanisms of Development2001
11597444Mycobacterium smegmatis: an absurd model for tuberculosis?Trends in Microbiology2001
11575915Promoter-specific involvement of the FixJ receiver domain in transcriptional activation.Journal of Molecular Biology2001
11481432Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid.Proc Natl Acad Sci U S A2001
11481430Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021.Proc Natl Acad Sci U S A2001
11274131glnD and mviN are genes of an essential operon in Sinorhizobium meliloti.Journal of Bacteriology2001
11159333InterPro--an integrated documentation resource for protein families, domains and functional sites.Bioinformatics2000
10592243ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons.Nucleic Acids Research2000
10404623Whole genome protein domain analysis using a new method for domain clustering.1999
9847197Recent improvements of the ProDom database of protein domain families.Nucleic Acids Research1999
10564492Phosphorylation-induced dimerization of the FixJ receiver domain.Molecular Microbiology1999
10745992Browsing protein families via the 'Rich Family Description' format.Bioinformatics1999
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European Bioinformatics Institute (EMBL-EBI)
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University of Cape Town
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National Center for Biotechnology Information, National Institutes of Health
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University of Geneva
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University of Wurzburg
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The EMBL Outstation - The European Bioinformatics Institute
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University of Cambridge
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Medical Research Council Laboratory of Molecular Biology
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Craig Venter Institute, 9704 Medical Center Drive
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European Bioinformatics Institute
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Georgetown University Medical Center
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European Bioinformatics Institute (EMBL-EBI)
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University of Southern California
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EMBL's European Bioinformatics Institute (EMBL-EBI)
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European Bioinformatics Institute (EMBL-EBI)
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Queen Mary University of London, United Kingdom Healx Ltd
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