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Author Details

Chandra L Theesfeld
Lewis-Sigler Institute for Integrative Genomics, Princeton University
1996
37
28
PMIDPaper TitleJournal TitlePublished Year
37703883Atlas of primary cell-type-specific sequence models of gene expression and variant effects.Cell Rep Methods2023
33361113Modeling molecular development of breast cancer in canine mammary tumors.Genome Res2021
33888512Modeling transcriptional regulation of model species with deep learning.Genome Res2021
33689683Tissue-specific enhancer functional networks for associating distal regulatory regions to disease.Cell Syst2021
34341555Decoding disease: from genomes to networks to phenotypes.Nat Rev Genet2021
33462483Genome-wide landscape of RNA-binding protein target site dysregulation reveals a major impact on psychiatric disorder risk.Nat Genet2021
32587965Specific viral RNA drives the SARS CoV-2 nucleocapsid to phase separate.bioRxiv2020
33038424SARS-CoV-2 receptor networks in diabetic and COVID-19-associated kidney disease.Kidney Int2020
33290746Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid.Mol Cell2020
30685436A Computational Framework for Genome-wide Characterization of the Human Disease Landscape.Cell Syst2019
31553718Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development.PLoS Genet2019
31133750Whole-genome deep-learning analysis identifies contribution of noncoding mutations to autism risk.Nat Genet2019
30013180Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk.Nat Genet2018
27980099The BioGRID interaction database: 2017 update.Nucleic Acids Res2017
26729909Use of the BioGRID Database for Analysis of Yeast Protein and Genetic Interactions.Cold Spring Harb Protoc2016
27479844Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder.Nat Neurosci2016
26975778An extended set of yeast-based functional assays accurately identifies human disease mutations.Genome Res2016
26729913BioGRID: A Resource for Studying Biological Interactions in Yeast.Cold Spring Harb Protoc2016
25428363The BioGRID interaction database: 2015 update.Nucleic Acids Res2015
23306196Insulin-induced gene protein (INSIG)-dependent sterol regulation of Hmg2 endoplasmic reticulum-associated degradation (ERAD) in yeast.J Biol Chem2013
21628456The sterol-sensing domain (SSD) directly mediates signal-regulated endoplasmic reticulum-associated degradation (ERAD) of 3-hydroxy-3-methylglutaryl (HMG)-CoA reductase isozyme Hmg2.J Biol Chem2011
17142221Expanded protein information at SGD: new pages and proteome browser.Nucleic Acids Res2007
16381907Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.Nucleic Acids Res2006
15608219Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD).Nucleic Acids Res2005
16420673Discovery of biological networks from diverse functional genomic data.Genome Biol2005
15616194Opposing roles for actin in Cdc42p polarization.Mol Biol Cell2005
14681407The Gene Ontology (GO) database and informatics resource.Nucleic Acids Res2004
15153302Saccharomyces genome database: underlying principles and organisation.Brief Bioinform2004
14681421Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.Nucleic Acids Res2004
12519985Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins.Nucleic Acids Res2003
12925763A monitor for bud emergence in the yeast morphogenesis checkpoint.Mol Biol Cell2003
11856728Loss of p53 compensates for alpha v-integrin function in retinal neovascularization.J Biol Chem2002
12388757Determinants of Swe1p degradation in Saccharomyces cerevisiae.Mol Biol Cell2002
10805747Septin-dependent assembly of a cell cycle-regulatory module in Saccharomyces cerevisiae.Mol Cell Biol2000
10477756The role of actin in spindle orientation changes during the Saccharomyces cerevisiae cell cycle.J Cell Biol1999
10490630The morphogenesis checkpoint in Saccharomyces cerevisiae: cell cycle control of Swe1p degradation by Hsl1p and Hsl7p.Mol Cell Biol1999
8790405Involvement of integrins alpha v beta 3 and alpha v beta 5 in ocular neovascular diseases.Proc Natl Acad Sci U S A1996
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Collaborators

Olga G Troyanskaya
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Co-authored papers 15
Kara Dolinski
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Co-authored papers 15
Jodi E Hirschman
Broad Institute of MIT and Harvard
Co-authored papers 10
Rose Oughtred
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Co-authored papers 9
Aaron K Wong
Flatiron Institute, Simons Foundation
Co-authored papers 9
Dianna G Fisk
Stanford Medicine Clinical Genomics Program
Co-authored papers 7
Maria C Costanzo
The Broad Institute of Harvard and MIT
Co-authored papers 7
Stacia R Engel
Stanford University
Co-authored papers 7
David Botstein
Calico Life Sciences LLC
Co-authored papers 7
Eurie L Hong
Stanford University School of Medicine
Co-authored papers 7
Rama Balakrishnan
Genentech Inc.
Co-authored papers 7
Karen R Christie
Stanford University Medical School
Co-authored papers 7
Anand Sethuraman
Stanford University School of Medicine
Co-authored papers 7
Selina S Dwight
Stanford University School of Medicine
Co-authored papers 7
Shuai Weng
Stanford University
Co-authored papers 6
Robert S Nash
Stanford University
Co-authored papers 6
J Michael Cherry
Stanford University
Co-authored papers 6
Gail Binkley
Stanford University
Co-authored papers 6
Mark Schroeder
Co-authored papers 5
Christie S Chang
Co-authored papers 5
Jennifer Rust
Co-authored papers 5
Lorrie Boucher
The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital
Co-authored papers 4
Andrew Chatr-Aryamontri
Institute for Research in Immunology and Cancer (IRIC), University of Montreal
Co-authored papers 4
Mike Tyers
Institute for Research in Immunology and Cancer (IRIC), Universite de Montreal
Co-authored papers 4
Chris Stark
The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital
Co-authored papers 4
Bobby-Joe Breitkreutz
The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital
Co-authored papers 4
Becket Feierbach
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Co-authored papers 3
Teresa Reguly
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Andrew Winter
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