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Author Details

Matthew Stephens
University of Chicago
2000
133
68
PMIDPaper TitleJournal TitlePublished Year
37425935Fast and flexible joint fine-mapping of multiple traits via the Sum of Single Effects model.bioRxiv2024
37645713Dissecting tumor transcriptional heterogeneity from single-cell RNA-seq data by generalized binary covariance decomposition.bioRxiv2024
37425935Fast and flexible joint fine-mapping of multiple traits via the Sum of Single Effects model.bioRxiv2024
37645713Dissecting tumor transcriptional heterogeneity from single-cell RNA-seq data by generalized binary covariance decomposition.bioRxiv2024
36805614Socio-economic and psychosocial determinants of violent discipline among parents in Asia Pacific countries during COVID-19: Focus on disadvantaged populations.Child Abuse Negl2023
37858253GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership.Genome Biol2023
37418505A flexible empirical Bayes approach to multivariate multiple regression, and its improved accuracy in predicting multi-tissue gene expression from genotypes.PLoS Genet2023
36778287Organism-Wide Analysis of Sepsis Reveals Mechanisms of Systemic Inflammation.bioRxiv2023
36945441GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership.bioRxiv2023
36805614Socio-economic and psychosocial determinants of violent discipline among parents in Asia Pacific countries during COVID-19: Focus on disadvantaged populations.Child Abuse Negl2023
37858253GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership.Genome Biol2023
37418505A flexible empirical Bayes approach to multivariate multiple regression, and its improved accuracy in predicting multi-tissue gene expression from genotypes.PLoS Genet2023
36945441GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership.bioRxiv2023
36778287Organism-Wide Analysis of Sepsis Reveals Mechanisms of Systemic Inflammation.bioRxiv2023
37275677Discussion of "Confidence Intervals for Nonparametric Empirical Bayes Analysis".J Am Stat Assoc2022
35606880Fine-mapping studies distinguish genetic risks for childhood- and adult-onset asthma in the HLA region.Genome Med2022
35853082Fine-mapping from summary data with the "Sum of Single Effects" model.PLoS Genet2022
37275677Discussion of "Confidence Intervals for Nonparametric Empirical Bayes Analysis".J Am Stat Assoc2022
35606880Fine-mapping studies distinguish genetic risks for childhood- and adult-onset asthma in the HLA region.Genome Med2022
35853082Fine-mapping from summary data with the "Sum of Single Effects" model.PLoS Genet2022
34031584Separating measurement and expression models clarifies confusion in single-cell RNA sequencing analysis.Nat Genet2021
37920532Empirical Bayes Matrix Factorization.J Mach Learn Res2021
33776580Dispersal syndromes drive the formation of biogeographical regions, illustrated by the case of Wallace's Line.Glob Ecol Biogeogr2021
34031584Separating measurement and expression models clarifies confusion in single-cell RNA sequencing analysis.Nat Genet2021
33554857Dynamic effects of genetic variation on gene expression revealed following hypoxic stress in cardiomyocytes.Elife2021
33499903Exploiting the GTEx resources to decipher the mechanisms at GWAS loci.Genome Biol2021
37920532Empirical Bayes Matrix Factorization.J Mach Learn Res2021
33776580Dispersal syndromes drive the formation of biogeographical regions, illustrated by the case of Wallace's Line.Glob Ecol Biogeogr2021
33554857Dynamic effects of genetic variation on gene expression revealed following hypoxic stress in cardiomyocytes.Elife2021
33499903Exploiting the GTEx resources to decipher the mechanisms at GWAS loci.Genome Biol2021
29985984Empirical Bayes shrinkage and false discovery rate estimation, allowing for unwanted variation.Biostatistics2020
37220626A simple new approach to variable selection in regression, with application to genetic fine mapping.J R Stat Soc Series B Stat Methodol2020
32312741Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis.Genome Res2020
32472065Publisher Correction: Mendelian randomization accounting for correlated and uncorrelated pleiotropic effects using genome-wide summary statistics.Nat Genet2020
32451458Mendelian randomization accounting for correlated and uncorrelated pleiotropic effects using genome-wide summary statistics.Nat Genet2020
33762803A Fast Algorithm for Maximum Likelihood Estimation of Mixture Proportions Using Sequential Quadratic Programming.J Comput Graph Stat2020
32601472Genetic analyses support the contribution of mRNA N<sup>6</sup>-methyladenosine (m<sup>6</sup>A) modification to human disease heritability.Nat Genet2020
32913075Cell type-specific genetic regulation of gene expression across human tissues.Science2020
32913072The impact of sex on gene expression across human tissues.Science2020
29985984Empirical Bayes shrinkage and false discovery rate estimation, allowing for unwanted variation.Biostatistics2020
37220626A simple new approach to variable selection in regression, with application to genetic fine mapping.J R Stat Soc Series B Stat Methodol2020
33762803A Fast Algorithm for Maximum Likelihood Estimation of Mixture Proportions Using Sequential Quadratic Programming.J Comput Graph Stat2020
32601472Genetic analyses support the contribution of mRNA N<sup>6</sup>-methyladenosine (m<sup>6</sup>A) modification to human disease heritability.Nat Genet2020
32913075Cell type-specific genetic regulation of gene expression across human tissues.Science2020
32913072The impact of sex on gene expression across human tissues.Science2020
32312741Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis.Genome Res2020
32472065Publisher Correction: Mendelian randomization accounting for correlated and uncorrelated pleiotropic effects using genome-wide summary statistics.Nat Genet2020
32451458Mendelian randomization accounting for correlated and uncorrelated pleiotropic effects using genome-wide summary statistics.Nat Genet2020
30640906Estimating recent migration and population-size surfaces.PLoS Genet2019
31596850Bayesian multivariate reanalysis of large genetic studies identifies many new associations.PLoS Genet2019
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Collaborators

Jonathan K Pritchard
Co-authored papers 19
Gao Wang
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Co-authored papers 7
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Co-authored papers 7
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Co-authored papers 7
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Co-authored papers 7
Barbara E Engelhardt
Co-authored papers 6
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Hae Kyung Im
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Howard J Edenberg
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Paul M Ridker
Co-authored papers 4
David J Cutler
Emory University School of Medicine
Co-authored papers 3
François Aguet
Co-authored papers 3
Sarah Kim-Hellmuth
Co-authored papers 3
Suzanne M Leal
Center for Statistical Genetics, Columbia University Medical Center
Co-authored papers 3
Ayellet V Segrè
Co-authored papers 3
Release 1.2