Author details

Full Name

Ceslovas Venclovas

Affiliation

ORCID

Career Start Year

1992

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37034714	RecA-NT homology motif in ImuB is essential for mycobacterial ImuA'-ImuB protein interaction and mutasome function.		2023
38033086	Ribosomal stalk-captured CARF-RelE ribonuclease inhibits translation following CRISPR signaling.		2023
37905971	Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.	Proteins	2023
37578163	Prediction of protein assemblies by structure sampling followed by interface-focused scoring.		2023
37283696	Editorial: Protein recognition and associated diseases.	Front Bioinform	2023
37020015	TnpB structure reveals minimal functional core of Cas12 nuclease family.		2023
37365936	Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study.	Proteomics	2023
37530405	Investigating the composition and recruitment of the mycobacterial ImuA'-ImuB-DnaE2 mutasome.		2023
37482904	VoroIF-GNN: Voronoi tessellation-derived protein-protein interface assessment using a graph neural network.		2023
36192537	Short prokaryotic Argonautes provide defence against incoming mobile genetic elements through NAD depletion.	Nature Microbiology	2022
34619744	Transposon-associated TnpB is a programmable RNA-guided DNA endonuclease.	Nature	2021
34176161	Modeling of protein complexes in CASP14 with emphasis on the interaction interface prediction.	Proteins: Structure, Function and Bioinformatics	2021
33620450	VoroCNN: deep convolutional neural network built on 3D Voronoi tessellation of protein structures.	Bioinformatics	2021
34132767	VoroContacts: a tool for the analysis of interatomic contacts in macromolecular structures.		2021
33296094	NR5A1 c.991-1GÂ >Â C splice-site variant causes familial 46,XY partial gonadal dysgenesis with incomplete penetrance.	Clin Endocrinol (Oxf)	2021
34462960	Modeling SARS-CoV-2 proteins in the CASP-commons experiment.	Proteins	2021
32621223	Template-Based Modeling of Protein Complexes Using the PPI3D Web Server.	Methods in Molecular Biology	2020
31857715	Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants.	Nat Rev Microbiol	2020
31697420	Template-based modeling of diverse protein interactions in CAPRI rounds 38-45.	Proteins: Structure, Function and Bioinformatics	2020
32246713	PAM recognition by miniature CRISPR-Cas12f nucleases triggers programmable double-stranded DNA target cleavage.	Nucleic Acids Research	2020
32006279	Contact Area-Based Structural Analysis of Proteins and Their Complexes Using CAD-Score.	Methods in Molecular Biology	2020
33139742	A catalogue of biochemically diverse CRISPR-Cas9 orthologs.	Nature Communications	2020
32976577	Diversity and evolution of B-family DNA polymerases.	Nucleic Acids Research	2020
33290744	HEPN-MNT Toxin-Antitoxin System: The HEPN Ribonuclease Is Neutralized by OligoAMPylation.	Molecular Cell	2020
32735657	Evolutionary and functional classification of the CARF domain superfamily, key sensors in prokaryotic antivirus defense.	Nucleic Acids Research	2020
31294859	Structural modeling of protein complexes: Current capabilities and challenges.	Proteins: Structure, Function and Bioinformatics	2019
31612567	Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.	Proteins	2019
30169622	Comparative analysis of methods for evaluation of protein models against native structures.	Bioinformatics	2019
30916324	New insights into the structures and interactions of bacterial Y-family DNA polymerases.	Nucleic Acids Research	2019
31073605	VoroMQA web server for assessing three-dimensional structures of proteins and protein complexes.	Nucleic Acids Research	2019
31265154	Estimation of model accuracy in CASP13.	Proteins	2019
29198957	Novel Families of Archaeo-Eukaryotic Primases Associated with Mobile Genetic Elements of Bacteria and Archaea.	Journal of Molecular Biology	2018
28905467	Modeling of protein complexes in CAPRI Round 37 using template-based approach combined with model selection.	Proteins: Structure, Function and Bioinformatics	2018
29891635	DnaQ exonuclease-like domain of Cas2 promotes spacer integration in a type I-E CRISPR-Cas system.	EMBO Reports	2018
29471489	The H-subunit of the restriction endonuclease CglI contains a prototype DEAD-Z1 helicase-like motor.	Nucleic Acids Research	2018
27773522	Type III CRISPR-Cas Immunity: Major Differences Brushed Aside.	Trends in Microbiology	2017
28663439	A cyclic oligonucleotide signaling pathway in type III CRISPR-Cas systems.	Science	2017
28011769	The PPI3D web server for searching, analyzing and modeling protein-protein interactions in the context of 3D structures.		2017
28263393	VoroMQA: Assessment of protein structure quality using interatomic contact areas.	Proteins: Structure, Function and Bioinformatics	2017
28108661	A structure-function analysis of the yeast Elg1 protein reveals the importance of PCNA unloading in genome stability maintenance.	Nucleic Acids Research	2017
27091242	Structure of Csm2 elucidates the relationship between small subunits of CRISPR-Cas effector complexes.	FEBS Letters	2016
27112572	The logic of DNA replication in double-stranded DNA viruses: insights from global analysis of viral genomes.	Nucleic Acids Research	2016
27105119	Spatiotemporal Control of Type III-A CRISPR-Cas Immunity: Coupling DNA Degradation with the Target RNA Recognition.	Molecular Cell	2016
26350214	Human HLTF mediates postreplication repair by its HIRAN domain-dependent replication fork remodelling.	Nucleic Acids Res	2015
25590277	The cytolytic activity of vaginolysin strictly depends on cholesterol and is potentiated by human CD59.	Toxins	2015
25680966	Functional mapping of the plant small RNA methyltransferase: HEN1 physically interacts with HYL1 and DICER-LIKE 1 proteins.	Nucleic Acids Research	2015
24613485	Conformational analysis of processivity clamps in solution demonstrates that tertiary structure does not correlate with protein dynamics.	Structure	2014
25458845	Programmable RNA shredding by the type III-A CRISPR-Cas system of Streptococcus thermophilus.	Molecular Cell	2014
24106089	Comprehensive analysis of DNA polymerase III Î± subunits and their homologs in bacterial genomes.	Nucleic Acids Research	2014
24623815	The use of interatomic contact areas to quantify discrepancies between RNA 3D models and reference structures.	Nucleic Acids Research	2014