Skip to Main Content

Author Details

Alejandro A Sch??ffer
National Cancer Institute, National Institutes of Health
1993
214
69
PMIDPaper TitleJournal TitlePublished Year
36774364A deep learning approach reveals unexplored landscape of viral expression in cancer.Nat Commun2023
37090544Glucose-6-Phosphate Dehydrogenase (G6PD) Deficiency and Long-Term Risk of Immune-Related diseases.medRxiv2023
37316351Single-cell methylation sequencing data reveal succinct metastatic migration histories and tumor progression models.Genome Res2023
37245006Genome-wide DNA methylation profiling of HPV-negative leukoplakia and gingivobuccal complex cancers.Clin Epigenetics2023
37270587Optimizing cancer immunotherapy response prediction by tumor aneuploidy score and fraction of copy number alterations.NPJ Precis Oncol2023
36513065Clinically oriented prediction of patient response to targeted and immunotherapies from the tumor transcriptome.Med2023
34340996The tumour microenvironment shapes innate lymphoid cells in patients with hepatocellular carcinoma.Gut2022
35632392Clinical and Laboratory Features in the Israeli Population with COVID-19 Infection after Pfizer-BioNTech mRNA Booster Vaccination.Vaccines (Basel)2022
36587184Single-cell resolved ploidy and chromosomal aberrations in nonalcoholic steatohepatitis-(NASH) induced hepatocellular carcinoma and its precursor lesions.Sci Rep2022
36497367Sex Biases in Cancer and Autoimmune Disease Incidence Are Strongly Positively Correlated with Mitochondrial Gene Expression across Human Tissues.Cancers (Basel)2022
36307411Strain level microbial detection and quantification with applications to single cell metagenomics.Nat Commun2022
36383380Characterization of Oncology Clinical Trials Using Germline Genetic Data.JAMA Netw Open2022
35338126The landscape of receptor-mediated precision cancer combination therapy via a single-cell perspective.Nat Commun2022
35018390Predicting COVID-19 severity using major risk factors and received vaccines.medRxiv2022
34289030Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data.Bioinformatics2021
33635861Ancestral haplotype reconstruction in endogamous populations using identity-by-descent.PLoS Comput Biol2021
35062724Large-Scale Study of Antibody Titer Decay following BNT162b2 mRNA Vaccine or SARS-CoV-2 Infection.Vaccines (Basel)2021
34994632Using a Recently Approved Tumor Mutational Burden Biomarker to Stratify Patients for Immunotherapy May Introduce a Sex Bias.JCO Precis Oncol2021
34384346Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation.BMC Bioinformatics2021
34763675Integration of adeno-associated virus (AAV) into the genomes of most Thai and Mongolian liver cancer patients does not induce oncogenesis.BMC Genomics2021
34819275Elapsed time since BNT162b2 vaccine and risk of SARS-CoV-2 infection: test negative design study.BMJ2021
34462761Large-scale study of antibody titer decay following BNT162b2 mRNA vaccine or SARS-CoV-2 infection.medRxiv2021
34401882Elapsed time since BNT162b2 vaccine and risk of SARS-CoV-2 infection in a large cohort.medRxiv2021
32181683Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data.J Comput Biol2020
35121843Higher prevalence of homologous recombination deficiency in tumors from African Americans versus European Americans.Nat Cancer2020
33438800The GENDULF algorithm: mining transcriptomics to uncover modifier genes for monogenic diseases.Mol Syst Biol2020
32747625Author Correction: Mutations in COMP cause familial carpal tunnel syndrome.Nat Commun2020
32686688Mutations in COMP cause familial carpal tunnel syndrome.Nat Commun2020
32729248In vitro and in vivo identification of clinically approved drugs that modify ACE2 expression.Mol Syst Biol2020
32416097High Levels of Chromosomal Copy Number Alterations and TP53 Mutations Correlate with Poor Outcome in Younger Breast Cancer Patients.Am J Pathol2020
31151998GRAF-pop: A Fast Distance-Based Method To Infer Subject Ancestry from Multiple Genotype Datasets Without Principal Components Analysis.G3 (Bethesda)2019
30170123Hypomorphic caspase activation and recruitment domain 11 (CARD11) mutations associated with diverse immunologic phenotypes with or without atopic disease.J Allergy Clin Immunol2019
30842225<i>NAA10</i> polyadenylation signal variants cause syndromic microphthalmia.J Med Genet2019
28782633Plasma cell deficiency in human subjects with heterozygous mutations in Sec61 translocon alpha 1 subunit (SEC61A1).J Allergy Clin Immunol2018
29907690ZNF341 controls STAT3 expression and thereby immunocompetence.Sci Immunol2018
29800151The evolution of single cell-derived colorectal cancer cell lines is dominated by the continued selection of tumor-specific genomic imbalances, despite random chromosomal instability.Carcinogenesis2018
29986017Genome-Wide Changes in Protein Translation Efficiency Are Associated with Autism.Genome Biol Evol2018
29469822Autosomal recessive Noonan syndrome associated with biallelic LZTR1 variants.Genet Med2018
29181861Aneuploidy, TP53 mutation, and amplification of MYC correlate with increased intratumor heterogeneity and poor prognosis of breast cancer patients.Genes Chromosomes Cancer2018
29069347VecScreen_plus_taxonomy: imposing a tax(onomy) increase on vector contamination screening.Bioinformatics2018
27899678Virus Variation Resource - improved response to emergent viral outbreaks.Nucleic Acids Res2017
28433800Chromosomal Alterations and Gene Expression Changes Associated with the Progression of Leukoplakia to Advanced Gingivobuccal Cancer.Transl Oncol2017
28190876The evolution of tumour phylogenetics: principles and practice.Nat Rev Genet2017
28122634Integrated genome-wide analysis of expression quantitative trait loci aids interpretation of genomic association studies.Genome Biol2017
28369036Chromatin-remodeling factor SMARCD2 regulates transcriptional networks controlling differentiation of neutrophil granulocytes.Nat Genet2017
29167558Recurring Amplification at 11q22.1-q22.2 Locus Plays an Important Role in Lymph Node Metastasis and Radioresistance in OSCC.Sci Rep2017
28780564A common <i>SLC26A4</i>-linked haplotype underlying non-syndromic hearing loss with enlargement of the vestibular aqueduct.J Med Genet2017
28609482Quickly identifying identical and closely related subjects in large databases using genotype data.PLoS One2017
26175310Phylogenetic analysis of multiple FISH markers in oral tongue squamous cell carcinoma suggests that a diverse distribution of copy number changes is associated with poor prognosis.Int J Cancer2016
26353381Classifying the Progression of Ductal Carcinoma from Single-Cell Sampled Data via Integer Linear Programming: A Case Study.IEEE/ACM Trans Comput Biol Bioinform2016
  • 1 - 50 of 214

Recommended Authors

Alexandre Montpetit
McGill University and Genome Quebec Innovation Centre
Career Start Year 1998
Number of shared co-authors 5
Vineet Bafna
University of California San Diego
Career Start Year 1998
Number of shared co-authors 6
Sean McGrath
Harvard T.H. Chan School of Public Health
Career Start Year 1996
Number of shared co-authors 2
Jared C Roach
Institute for Systems Biology
Career Start Year 1995
Number of shared co-authors 2
Simon Heath
Barcelona Institute of Science and Technology (BIST)
Career Start Year 1995
Number of shared co-authors 11
Lucinda Fulton
McDonnell Genome Institute, Washington University School of Medicine
Career Start Year 1994
Number of shared co-authors 15
Kimberly F Doheny
Center for Inherited Disease Research, Johns Hopkins School of Medicine
Career Start Year 1993
Number of shared co-authors 15
Thomas J Hudson
Ontario Institute for Cancer Research
Career Start Year 1991
Number of shared co-authors 18
Samuel Levy
Bluestar Genomics Inc.
Career Start Year 1991
Number of shared co-authors 3
Francisco M De La Vega
Stanford University School of Medicine
Career Start Year 1991
Number of shared co-authors 3
Aleksandar Milosavljevic
Baylor College of Medicine
Career Start Year 1991
Number of shared co-authors 14
Gustavo Glusman
Institute for Systems Biology
Career Start Year 1988
Number of shared co-authors 9
Donna M Muzny
Baylor College of Medicine
Career Start Year 1988
Number of shared co-authors 28
Ian Dunham
European Bioinformatics Institute (EMBL-EBI)
Career Start Year 1987
Number of shared co-authors 10
Richard A Gibbs
Baylor College of Medicine
Career Start Year 1987
Number of shared co-authors 34
Steven E Scherer
Baylor College of Medicine
Career Start Year 1987
Number of shared co-authors 13
David Haussler
Genomics Institute, University of California Santa Cruz
Career Start Year 1986
Number of shared co-authors 19
Alun Thomas
University of Utah School of Medicine
Career Start Year 1986
Number of shared co-authors 0
John D McPherson
Ontario Institute for Cancer Research
Career Start Year 1986
Number of shared co-authors 19
Eric S Lander
Vanderbilt-Ingram Cancer Center, Vanderbilt University
Career Start Year 1986
Number of shared co-authors 22
Jiannis Ragoussis
McGill University
Career Start Year 1986
Number of shared co-authors 6
David A Wheeler
Baylor College of Medicine
Career Start Year 1984
Number of shared co-authors 14
Richard K Wilson
The Ohio State University
Career Start Year 1983
Number of shared co-authors 18
Peter K Rogan
CytoGnomix Inc.
Career Start Year 1981
Number of shared co-authors 1
Richard M Myers
HudsonAlpha Institute for Biotechnology
Career Start Year 1980
Number of shared co-authors 13
Francis S Collins
University of Michigan ann arbor
Career Start Year 1978
Number of shared co-authors 34
Aravinda Chakravarti
New York University Grossman School of Medicine
Career Start Year 1977
Number of shared co-authors 17
Deborah A Nickerson
University of Washington
Career Start Year 1976
Number of shared co-authors 20
Kelly A Frazer
University of California, USA Institute for Genomic Medicine
Career Start Year 1967
Number of shared co-authors 9
Richard Durbin
University of Cambridge
Career Start Year 1964
Number of shared co-authors 13

Collaborators

Richa Agarwala
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 46
Eytan Ruppin
National Cancer Institute
Co-authored papers 19
Thomas Ried
Center for Cancer Research, National Cancer Institute
Co-authored papers 15
Stephen J O'Brien
Co-authored papers 14
Christoph Klein
Kinderklinik und Kinderpoliklinik der Ludwig-Maximilians-Universitat Munchen
Co-authored papers 13
Leslie G Biesecker
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 12
William J Murphy
Co-authored papers 8
Joie Davis
National Institutes of Health
Co-authored papers 7
Niko Beerenwinkel
ETH Zurich
Co-authored papers 7
Ariel Israel
Co-authored papers 7
Braxton D Mitchell
Co-authored papers 6
Toni I Pollin
University of Maryland School of Medicine
Co-authored papers 6
Alan R Shuldiner
University of Maryland School of Medicine
Co-authored papers 6
Holger Moch
University Hospital Zurich
Co-authored papers 5
Darawalee Wangsa
Center for Cancer Research, National Cancer Institute
Co-authored papers 5
Kenneth Aldape
National Cancer Institute
Co-authored papers 5
Clair A Francomano
Indiana University School of Medicine
Co-authored papers 4
Alexandra F Freeman
National Institute of Allergy and Infectious Diseases
Co-authored papers 4
Olli Kallioniemi
Karolinska Institute
Co-authored papers 4
Robert M Stephens
Frederick National Laboratory for Cancer Research, Inc.
Co-authored papers 4
Michael Feolo
University of Massachusetts Medical School
Co-authored papers 3
Jeffrey R O'Connell
University of Maryland School of Medicine
Co-authored papers 3
Robert W Cottingham
Oak Ridge National Laboratory
Co-authored papers 3
Patrick F McArdle
Co-authored papers 3
Padma S Rajagopal
National Cancer Institute, National Institutes of Health
Co-authored papers 3
Moritz Gerstung
German Cancer Research Centre DKFZ
Co-authored papers 3
Jennifer J Johnston
Center for Precision Health Research, National Human Genome Research Institute
Co-authored papers 3
Joseph D Terwilliger
Co-authored papers 3
Guido Sauter
Institute of Pathology, University Medical Center Hamburg-Eppendorf
Co-authored papers 3
Andre Franke
Institute of Clinical Molecular Biology, Kiel University
Co-authored papers 2
Release 1.2