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Author Details

Martijn A Huynen
Radboud University Medical Centre Nijmegen
1992
234
70
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37675756Primary Exposure to SARS-CoV-2 via Infection or Vaccination Determines Mucosal Antibody-Dependent ACE2 Binding Inhibition.J Infect Dis2024
37475887Understanding structure-guided variant effect predictions using 3D convolutional neural networks.Front Mol Biosci2023
37549177Comparative Clustering (CompaCt) of eukaryote complexomes identifies novel interactions and sheds light on protein complex evolution.PLoS Comput Biol2023
37731597Longitudinal analysis on the ecological dynamics of the cervicovaginal microbiome in hrHPV infection.Comput Struct Biotechnol J2023
38089575Quantifying the deformability of malaria-infected red blood cells using deep learning trained on synthetic cells.iScience2023
37401363Uncharacterized protein C17orf80 - a novel interactor of human mitochondrial nucleoids.J Cell Sci2023
35023579Mitochondrial RNA processing defect caused by a SUPV3L1 mutation in two siblings with a novel neurodegenerative syndrome.J Inherit Metab Dis2022
35676700Targeted RNA next generation sequencing analysis of cervical smears can predict the presence of hrHPV-induced cervical lesions.BMC Med2022
35699132CG7630 is the Drosophila melanogaster homolog of the cytochrome c oxidase subunit COX7B.EMBO Rep2022
35587988Mitochondrial complex complexification.Science2022
36460655Prior exposure to B. pertussis shapes the mucosal antibody response to acellular pertussis booster vaccination.Nat Commun2022
36171433In-depth insights into cervicovaginal microbial communities and hrHPV infections using high-resolution microbiome profiling.NPJ Biofilms Microbiomes2022
35980030Assessing the Cervicovaginal Microbiota in the Context of hrHPV Infections: Temporal Dynamics and Therapeutic Strategies.mBio2022
35974327Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes.BMC Ecol Evol2022
35177621BCG-induced trained immunity enhances acellular pertussis vaccination responses in an explorative randomized clinical trial.NPJ Vaccines2022
33385517Stimulation of cholesterol biosynthesis in mitochondrial complex I-deficiency lowers reductive stress and improves motor function and survival in mice.Biochim Biophys Acta Mol Basis Dis2021
33843573Genome-wide analysis in <i>Escherichia coli</i> unravels a high level of genetic homoplasy associated with cefotaxime resistance.Microb Genom2021
33609524Invisible leashes: The tethering VAPs from infectious diseases to neurodegeneration.J Biol Chem2021
33930021Novel insights from the Plasmodium falciparum sporozoite-specific proteome by probabilistic integration of 26 studies.PLoS Comput Biol2021
33722514CEDAR, an online resource for the reporting and exploration of complexome profiling data.Biochim Biophys Acta Bioenerg2021
34915863Novel high-resolution targeted sequencing of the cervicovaginal microbiome.BMC Biol2021
34556667SARS-CoV-2 mucosal antibody development and persistence and their relation to viral load and COVID-19 symptoms.Nat Commun2021
34494883A Prioritized and Validated Resource of Mitochondrial Proteins in <i>Plasmodium</i> Identifies Unique Biology.mSphere2021
34385463Monoclonal antibodies block transmission of genetically diverse Plasmodium falciparum strains to mosquitoes.NPJ Vaccines2021
34301630Differences in the number of de novo mutations between individuals are due to small family-specific effects and stochasticity.Genome Res2021
34155201Composition and stage dynamics of mitochondrial complexes in Plasmodium falciparum.Nat Commun2021
31537894RNA-based high-risk HPV genotyping and identification of high-risk HPV transcriptional activity in cervical tissues.Mod Pathol2020
32060342Surveillance-embedded genomic outbreak resolution of methicillin-susceptible Staphylococcus aureus in a neonatal intensive care unit.Sci Rep2020
32055399Metabolic models predict bacterial passengers in colorectal cancer.Cancer Metab2020
31831585Diabetes is associated with genotypically drug-resistant tuberculosis.Eur Respir J2020
32275929TMEM70 functions in the assembly of complexes I and V.Biochim Biophys Acta Bioenerg2020
32429152Uncovering Distinct Primary Vaccination-Dependent Profiles in Human <i>Bordetella Pertussis</i> Specific CD4+ T-Cell Responses Using a Novel Whole Blood Assay.Vaccines (Basel)2020
30649188COmplexome Profiling ALignment (COPAL) reveals remodeling of mitochondrial protein complexes in Barth syndrome.Bioinformatics2019
31747973Mapping actionable pathways and mutations in brain tumours using targeted RNA next generation sequencing.Acta Neuropathol Commun2019
31803741A Combined Mass Spectrometry and Data Integration Approach to Predict the Mitochondrial Poly(A) RNA Interacting Proteome.Front Cell Dev Biol2019
30001166Isocitrate dehydrogenase 1-mutated human gliomas depend on lactate and glutamate to alleviate metabolic stress.FASEB J2019
30172045Use of whole-genome sequencing to predict Mycobacterium tuberculosis drug resistance in Indonesia.J Glob Antimicrob Resist2019
31095607CiliaCarta: An integrated and validated compendium of ciliary genes.PLoS One2019
30767785Allele-specific RNA-seq expression profiling of imprinted genes in mouse isogenic pluripotent states.Epigenetics Chromatin2019
30881919Molecular Profiling of Druggable Targets in Clear Cell Renal Cell Carcinoma Through Targeted RNA Sequencing.Front Oncol2019
30347487The assembly pathway of complex I in Arabidopsis thaliana.Plant J2019
29323249Probabilistic data integration identifies reliable gametocyte-specific proteins and transcripts in malaria parasites.Sci Rep2018
30026265Mammalian embryo comparison identifies novel pluripotency genes associated with the naïve or primed state.Biol Open2018
30209068<i>Xrp1</i> genetically interacts with the ALS-associated <i>FUS</i> orthologue <i>caz</i> and mediates its toxicity.J Cell Biol2018
30281911Does mitochondrial DNA evolution in metazoa drive the origin of new mitochondrial proteins?IUBMB Life2018
29754270Heterozygous missense variants of LMX1A lead to nonsyndromic hearing impairment and vestibular dysfunction.Hum Genet2018
29402222Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis.BMC Genomics2018
29531366Towards predicting the environmental metabolome from metagenomics with a mechanistic model.Nat Microbiol2018
29325581Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses.Microbiome2018
28067622A homozygous FITM2 mutation causes a deafness-dystonia syndrome with motor regression and signs of ichthyosis and sensory neuropathy.Dis Model Mech2017
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Collaborators

Berend Snel
Utrecht University
Co-authored papers 36
Peer Bork
University of Wurzburg
Co-authored papers 23
Teunis J P van Dam
Utrecht University
Co-authored papers 13
Toni Gabald??n
Catalan Institution for Research and Advanced Studies
Co-authored papers 11
Vera van Noort
Leiden University, Institute of Biology Leiden
Co-authored papers 10
Hendrik G Stunnenberg
Co-authored papers 8
Han G Brunner
Maastricht University Medical Centre
Co-authored papers 7
Rachel H Giles
University Medical Center Utrecht
Co-authored papers 6
Christian Gilissen
Radboud University Medical Center
Co-authored papers 6
Colin A Johnson
University of Leeds Leeds Institute of Medical Research at St James's
Co-authored papers 4
Philip L Beales
UCL Great Ormond Street Institute of Child Health, University College London
Co-authored papers 3
Peter F Stadler
Co-authored papers 3
Christian von Mering
Co-authored papers 3
Robert B Russell
Heidelberg University
Co-authored papers 3
Dirk J Lefeber
Co-authored papers 3
Heymut Omran
University Hospital Muenster
Co-authored papers 3
Marc Strous
Co-authored papers 3
Erik van Nimwegen
University of Basel
Co-authored papers 2
Gerard W Dougherty
University Hospital Muenster
Co-authored papers 2
Cisca Wijmenga
Co-authored papers 2
Fowzan S Alkuraya
King Faisal Specialist Hospital and Research Center
Co-authored papers 2
Patrik Verstreken
Co-authored papers 2
Roger A Pedersen
Stanford University
Co-authored papers 2
Tim Hulsen
Department of Hospital Services & Informatics
Co-authored papers 2
Hindrik H D Kerstens
Co-authored papers 2
Daniel Birnbaum
Co-authored papers 2
Fran??ois Foulquier
CNRS, Universite de Lille
Co-authored papers 2
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 1
Martin McKibbin
Leeds Teaching Hospitals NHS Trust
Co-authored papers 1
David A D Parry
Co-authored papers 1
Release 1.2