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Author Details

Jason Walker
McDonnell Genome Institute, Washington University School of Medicine
2004
35
22
PMIDPaper TitleJournal TitlePublished Year
36373660CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase.Nucleic Acids Res2023
37910143Ultra-Deep Sequencing Reveals the Mutational Landscape of Classical Hodgkin Lymphoma.Cancer Res Commun2023
35241842Stem cell architecture drives myelodysplastic syndrome progression and predicts response to venetoclax-based therapy.Nat Med2022
35568002Genomic and transcriptomic somatic alterations of hepatocellular carcinoma in non-cirrhotic livers.Cancer Genet2022
35624339A community approach to the cancer-variant-interpretation bottleneck.Nat Cancer2022
35484266Author Correction: Stem cell architecture drives myelodysplastic syndrome progression and predicts response to venetoclax-based therapy.Nat Med2022
35041928Failure to Detect Mutations in U2AF1 due to Changes in the GRCh38 Reference Sequence.J Mol Diagn2022
34341766Bam-readcount - rapid generation of basepair-resolution sequence metrics.ArXiv2021
33556121Unraveling the chaotic genomic landscape of primary and metastatic canine appendicular osteosarcoma with current sequencing technologies and bioinformatic approaches.PLoS One2021
32577507The clonal evolution of metastatic colorectal cancer.Sci Adv2020
31907209pVACtools: A Computational Toolkit to Identify and Visualize Cancer Neoantigens.Cancer Immunol Res2020
31915069Correction to: Comprehensive gene expression meta-analysis identifies signature genes that distinguish microglia from peripheral monocytes/macrophages in health and glioma.Acta Neuropathol Commun2020
30764877Comprehensive gene expression meta-analysis identifies signature genes that distinguish microglia from peripheral monocytes/macrophages in health and glioma.Acta Neuropathol Commun2019
28760689Comprehensive discovery of noncoding RNAs in acute myeloid leukemia cell transcriptomes.Exp Hematol2017
28138153CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.Nat Genet2017
27029710A genomic case study of mixed fibrolamellar hepatocellular carcinoma.Ann Oncol2016
28389595Cancer Immunogenomics: Computational Neoantigen Identification and Vaccine Design.Cold Spring Harb Symp Quant Biol2016
26531824DGIdb 2.0: mining clinically relevant drug-gene interactions.Nucleic Acids Res2016
27181063Comprehensive genomic analysis reveals FLT3 activation and a therapeutic strategy for a patient with relapsed adult B-lymphoblastic leukemia.Exp Hematol2016
25258010RNA-sequencing reveals oligodendrocyte and neuronal transcripts in microglia relevant to central nervous system disease.Glia2015
26248053Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud.PLoS Comput Biol2015
26645048Optimizing cancer genome sequencing and analysis.Cell Syst2015
26585233RNA Sequencing of Tumor-Associated Microglia Reveals Ccl5 as a Stromal Chemokine Critical for Neurofibromatosis-1 Glioma Growth.Neoplasia2015
26158448Genome Modeling System: A Knowledge Management Platform for Genomics.PLoS Comput Biol2015
24814956cDNA hybrid capture improves transcriptome analysis on low-input and archived samples.J Mol Diagn2014
23297133Genomic impact of transient low-dose decitabine treatment on primary AML cells.Blood2013
24122041DGIdb: mining the druggable genome.Nat Methods2013
24147027F11R is a novel monocyte prognostic biomarker for malignant glioma.PLoS One2013
22817890The origin and evolution of mutations in acute myeloid leukemia.Cell2012
22980976Genomic landscape of non-small cell lung cancer in smokers and never-smokers.Cell2012
21067377DNMT3A mutations in acute myeloid leukemia.N Engl J Med2010
19657110Recurring mutations found by sequencing an acute myeloid leukemia genome.N Engl J Med2009
18356965Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps.Genome2008
15060021Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome.Genome Res2004
15592415A physical map of the chicken genome.Nature2004
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Collaborators

Elaine R Mardis
The Ohio State University
Co-authored papers 27
Malachi Griffith
Washington University
Co-authored papers 23
Obi L Griffith
Washington University
Co-authored papers 21
Vincent Magrini
The Ohio State University
Co-authored papers 16
Richard K Wilson
The Ohio State University
Co-authored papers 16
Joshua F McMichael
Washington University
Co-authored papers 13
Christopher A Miller
Washington University School of Medicine
Co-authored papers 13
David E Larson
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 12
Robert S Fulton
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 12
Zachary L Skidmore
Washington University in St. Louis School of Medicine
Co-authored papers 11
Timothy J Ley
Washington University School of Medicine
Co-authored papers 11
Kilannin Krysiak
Washington University School of Medicine
Co-authored papers 9
Sean McGrath
Harvard T.H. Chan School of Public Health
Co-authored papers 8
Christopher A Maher
Washington University in St Louis
Co-authored papers 8
Jasreet Hundal
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 8
Nicholas C Spies
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 7
James M Eldred
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 7
Adam C Coffman
Washington University
Co-authored papers 7
Li Ding
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 7
Benjamin J Ainscough
McDonnell Genome Institute, Washington University in St Louis School of Medicine
Co-authored papers 7
David H Gutmann
Co-authored papers 6
Michael D McLellan
McDonnell Genome Institute, Washington University in St. Louis
Co-authored papers 6
Matthew J Walter
Washington University School of Medicine in St. Louis
Co-authored papers 6
Katie M Campbell
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 5
Susanna Kiwala
Washington University
Co-authored papers 5
Jin Zhang
Washington University in St. Louis
Co-authored papers 5
John F DiPersio
Washington University School of Medicine
Co-authored papers 5
Avinash Ramu
Washington University School of Medicine
Co-authored papers 5
Daniel C Link
Washington University School of Medicine
Co-authored papers 5
Catrina Fronick
McDonnell Genome Institute, Washington University in St. Louis School of Medicine
Co-authored papers 5
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