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Author Details

Alex P Reynolds
Altius Institute for Biomedical Sciences
2009
22
19
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34996498Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations.Genome Biol2022
32728217Index and biological spectrum of human DNase I hypersensitive sites.Nature2020
32728250Global reference mapping of human transcription factor footprints.Nature2020
31161210eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data.Bioinformatics2019
30827930Integrated epigenomic profiling reveals endogenous retrovirus reactivation in renal cell carcinoma.EBioMedicine2019
30760496Integrated Functional Genomic Analysis Enables Annotation of Kidney Genome-Wide Association Study Loci.J Am Soc Nephrol2019
27008020Operating on Genomic Ranges Using BEDOPS.Methods Mol Biol2016
25693567Cell-of-origin chromatin organization shapes the mutational landscape of cancer.Nature2015
25910208Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution.Cell2015
25220462Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana.Cell Rep2014
25409824A comparative encyclopedia of DNA elements in the mouse genome.Nature2014
25409825Conservation of trans-acting circuitry during mammalian regulatory evolution.Nature2014
23953118Developmental fate and cellular maturity encoded in human regulatory DNA landscapes.Cell2013
24337295Exonic transcription factor binding directs codon choice and affects protein evolution.Science2013
23821440Genome-scale mapping of DNase I hypersensitivity.Curr Protoc Mol Biol2013
22576172BEDOPS: high-performance genomic feature operations.Bioinformatics2012
23021222Foxp3 exploits a pre-existent enhancer landscape for regulatory T cell lineage specification.Cell2012
22959076Circuitry and dynamics of human transcription factor regulatory networks.Cell2012
22955828Systematic localization of common disease-associated variation in regulatory DNA.Science2012
22955618An expansive human regulatory lexicon encoded in transcription factor footprints.Nature2012
22955617The accessible chromatin landscape of the human genome.Nature2012
19305407Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.Nat Methods2009
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Collaborators

John A Stamatoyannopoulos
Altius Institute for Biomedical Sciences
Co-authored papers 20
Richard Sandstrom
Altius Institute for Biomedical Sciences
Co-authored papers 17
Shane Neph
Altius Institute for Biomedical Sciences
Co-authored papers 13
Eric Haugen
Altius Institute for Biomedical Sciences
Co-authored papers 13
Jeff Vierstra
Altius Institute for Biomedical Sciences
Co-authored papers 12
Robert E Thurman
University of Washington
Co-authored papers 11
Audra K Johnson
Altius Institute for Biomedical Sciences
Co-authored papers 10
Morgan Diegel
Altius Institute for Biomedical Sciences
Co-authored papers 10
Eric Rynes
Altius Institute for Biomedical Sciences
Co-authored papers 9
Peter J Sabo
University of Washington
Co-authored papers 9
Rajinder Kaul
Altius Institute for Biomedical Sciences
Co-authored papers 9
Douglas Dunn
Altius Institute for Biomedical Sciences
Co-authored papers 8
Kristen Lee
Altius Institute for Biomedical Sciences
Co-authored papers 8
Daniel Bates
Altius Institute for Biomedical Sciences
Co-authored papers 7
Andrew B Stergachis
University of Washington School of Medicine
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Fidencio Neri
Altius Institute for Biomedical Sciences
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Theresa K Canfield
University of Washington
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Richard Humbert
University of Washington
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Erika Giste
University of Washington
Co-authored papers 5
R S Hansen
University of Washington
Co-authored papers 5
Shinny Vong
University of Washington
Co-authored papers 5
Benjamin Vernot
Max Planck Institute for Evolutionary Anthropology
Co-authored papers 5
Molly Weaver
University of Kentucky
Co-authored papers 4
Joshua M Akey
Princeton University
Co-authored papers 4
Anthony Shafer
University of Washington
Co-authored papers 4
Hao Wang
Altius Institute for Biomedical Sciences
Co-authored papers 4
Tanya Kutyavin
Altius Institute for Biomedical Sciences
Co-authored papers 4
Matthew T Maurano
Institute for Systems Genetics, NYU School of Medicine
Co-authored papers 4
Shamil R Sunyaev
Harvard Medical School
Co-authored papers 3
Michael S Kuehn
Co-authored papers 3
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