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Author Details

Jesse Gillis
Stanley Institute for Cognitive Genomics
2005
75
31
PMIDPaper TitleJournal TitlePublished Year
36549922Learning single-cell chromatin accessibility profiles using meta-analytic marker genes.Brief Bioinform2023
37940702The transcriptional legacy of developmental stochasticity.Nat Commun2023
37667001Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution.Nat Ecol Evol2023
37904929Population variability in X-chromosome inactivation across 9 mammalian species.bioRxiv2023
38076991Coexpression enhances cross-species integration of scRNA-seq across diverse plant species.bioRxiv2023
37390046A guide to the BRAIN Initiative Cell Census Network data ecosystem.PLoS Biol2023
36549922Learning single-cell chromatin accessibility profiles using meta-analytic marker genes.Brief Bioinform2023
37034757Preservation of co-expression defines the primary tissue fidelity of human neural organoids.bioRxiv2023
37667001Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution.Nat Ecol Evol2023
38076991Coexpression enhances cross-species integration of scRNA-seq across diverse plant species.bioRxiv2023
37904929Population variability in X-chromosome inactivation across 9 mammalian species.bioRxiv2023
37940702The transcriptional legacy of developmental stochasticity.Nat Commun2023
37390046A guide to the BRAIN Initiative Cell Census Network data ecosystem.PLoS Biol2023
37034757Preservation of co-expression defines the primary tissue fidelity of human neural organoids.bioRxiv2023
35106454Erratum: How many markers are needed to robustly determine a cell's type?iScience2022
35914524Variability of cross-tissue X-chromosome inactivation characterizes timing of human embryonic lineage specification events.Dev Cell2022
35451481Coexpression reveals conserved gene programs that co-vary with cell type across kingdoms.Nucleic Acids Res2022
36352464A global high-density chromatin interaction network reveals functional long-range and trans-chromosomal relationships.Genome Biol2022
36271855Defining the extent of gene function using ROC curvature.Bioinformatics2022
36520028Prevalent and dynamic binding of the cell cycle checkpoint kinase Rad53 to gene promoters.Elife2022
35319013Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse.Nature2022
35256454Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses.Genome Res2022
35106454Erratum: How many markers are needed to robustly determine a cell's type?iScience2022
35451481Coexpression reveals conserved gene programs that co-vary with cell type across kingdoms.Nucleic Acids Res2022
36520028Prevalent and dynamic binding of the cell cycle checkpoint kinase Rad53 to gene promoters.Elife2022
36271855Defining the extent of gene function using ROC curvature.Bioinformatics2022
36352464A global high-density chromatin interaction network reveals functional long-range and trans-chromosomal relationships.Genome Biol2022
35914524Variability of cross-tissue X-chromosome inactivation characterizes timing of human embryonic lineage specification events.Dev Cell2022
35319013Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse.Nature2022
35256454Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses.Genome Res2022
33002116Co-expression of calcium and hERG potassium channels reduces the incidence of proarrhythmic events.Cardiovasc Res2021
33972801Integrating barcoded neuroanatomy with spatial transcriptional profiling enables identification of gene correlates of projections.Nat Neurosci2021
34234317Scaling up reproducible research for single-cell transcriptomics using MetaNeighbor.Nat Protoc2021
34015329Single-cell co-expression analysis reveals that transcriptional modules are shared across cell types in the brain.Cell Syst2021
34280183Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain.PLoS Biol2021
33002116Co-expression of calcium and hERG potassium channels reduces the incidence of proarrhythmic events.Cardiovasc Res2021
33400914Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery.Dev Cell2021
34616066A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex.Nature2021
34616062Comparative cellular analysis of motor cortex in human, marmoset and mouse.Nature2021
34711969Integrative analysis methods for spatial transcriptomics.Nat Methods2021
34765918How many markers are needed to robustly determine a cell's type?iScience2021
34765918How many markers are needed to robustly determine a cell's type?iScience2021
34616066A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex.Nature2021
34616062Comparative cellular analysis of motor cortex in human, marmoset and mouse.Nature2021
34711969Integrative analysis methods for spatial transcriptomics.Nat Methods2021
34015329Single-cell co-expression analysis reveals that transcriptional modules are shared across cell types in the brain.Cell Syst2021
34234317Scaling up reproducible research for single-cell transcriptomics using MetaNeighbor.Nat Protoc2021
34280183Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain.PLoS Biol2021
33972801Integrating barcoded neuroanatomy with spatial transcriptional profiling enables identification of gene correlates of projections.Nat Neurosci2021
33400914Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery.Dev Cell2021
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Collaborators

Paul Pavlidis
University of British Columbia
Co-authored papers 21
Stephan Fischer
Institut Pasteur, Universite Paris Cite
Co-authored papers 13
Alexander Dobin
Co-authored papers 8
Michael Hawrylycz
Allen Institute for Brain Science
Co-authored papers 4
Brian R Herb
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 4
Eran A Mukamel
University of California San Diego
Co-authored papers 4
Aviv Regev
Broad Institute of MIT and Harvard
Co-authored papers 4
Owen White
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 4
Bing Ren
Center for Epigenomics, University of California San Diego
Co-authored papers 4
Ed S Lein
Allen Institute for Brain Science
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Seth A Ament
Institute for Genome Sciences, University of Maryland School of Medicine
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Thomas R Gingeras
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Z Josh Huang
Duke University School of Medicine
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Hongkui Zeng
Allen Institute for Brain Science
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Fangming Xie
University of California Los Angeles
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Joseph R Ecker
The Salk Institute for Biological Studies
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Zizhen Yao
Allen Institute for Brain Science
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Joshua Orvis
Institute for Genome Sciences, University of Maryland School of Medicine
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Rongxin Fang
Ludwig Institute for Cancer Research, University of California San Diego
Co-authored papers 4
Ronna Hertzano
University of Maryland School of Medicine
Co-authored papers 4
Richard H Scheuermann
J. Craig Venter Institute
Co-authored papers 3
Peter V Kharchenko
Co-authored papers 3
Brian D Aevermann
J. Craig Venter Institute
Co-authored papers 3
Anirban Paul
Penn State College of Medicine
Co-authored papers 3
Jeff Goldy
Co-authored papers 3
Boudewijn P F Lelieveldt
Leiden University Medical Center
Co-authored papers 3
Joseph R Nery
The Salk Institute for Biological Studies
Co-authored papers 3
Anup Mahurkar
Co-authored papers 3
Song-Lin Ding
Allen Institute for Brain Science
Co-authored papers 3
Evan Z Macosko
Co-authored papers 3
Release 1.2