Author details

Full Name

Eurie L Hong

Affiliation

Stanford University School of Medicine

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37066421	The ENCODE Uniform Analysis Pipelines.	bioRxiv	2023
37503119	The ENCODE Uniform Analysis Pipelines.	Res Sq	2023
36223959	COVID-19 susceptibility and severity risks in a cross-sectional survey of over 500 000 US adults.	BMJ Open	2022
35410379	Expanded COVID-19 phenotype definitions reveal distinct patterns of genetic association and protective effects.	Nat Genet	2022
34563119	Ancestry inference using reference labeled clusters of haplotypes.	BMC Bioinformatics	2021
28403240	SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.	PLoS One	2017
28169989	Clustering of 770,000 genomes reveals post-colonial population structure of North America.	Nat Commun	2017
26980513	Principles of metadata organization at the ENCODE data coordination center.	Database (Oxford)	2016
26527727	ENCODE data at the ENCODE portal.	Nucleic Acids Res	2016
26990993	Resources for the Comprehensive Discovery of Functional RNA Elements.	Mol Cell	2016
25776021	Ontology application and use at the ENCODE DCC.	Database (Oxford)	2015
23161678	Gene Ontology annotations and resources.	Nucleic Acids Res	2013
23396302	The YeastGenome app: the Saccharomyces Genome Database at your fingertips.	Database (Oxford)	2013
22110037	Saccharomyces Genome Database: the genomics resource of budding yeast.	Nucleic Acids Res	2012
22955989	Annotation of functional variation in personal genomes using RegulomeDB.	Genome Res	2012
22434836	CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.	Database (Oxford)	2012
22434830	YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit.	Database (Oxford)	2012
21411447	Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study.	Database (Oxford)	2011
19906697	Saccharomyces Genome Database provides mutant phenotype data.	Nucleic Acids Res	2010
19577472	Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns.	Trends Microbiol	2009
20157474	New mutant phenotype data curation system in the Saccharomyces Genome Database.	Database (Oxford)	2009
17982175	Gene Ontology annotations at SGD: new data sources and annotation methods.	Nucleic Acids Res	2008
17142221	Expanded protein information at SGD: new pages and proteome browser.	Nucleic Acids Res	2007
17942445	Mining experimental evidence of molecular function claims from the literature.	Bioinformatics	2007
16381907	Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.	Nucleic Acids Res	2006
17001629	Saccharomyces cerevisiae S288C genome annotation: a working hypothesis.	Yeast	2006
15608219	Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD).	Nucleic Acids Res	2005
16204247	Calcium ion promotes yeast Dmc1 activity via formation of long and fine helical filaments with single-stranded DNA.	J Biol Chem	2005
14681407	The Gene Ontology (GO) database and informatics resource.	Nucleic Acids Res	2004
15153302	Saccharomyces genome database: underlying principles and organisation.	Brief Bioinform	2004
14681421	Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.	Nucleic Acids Res	2004
12519985	Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins.	Nucleic Acids Res	2003
11551925	Saccharomyces cerevisiae Dmc1 protein promotes renaturation of single-strand DNA (ssDNA) and assimilation of ssDNA into homologous super-coiled duplex DNA.	J Biol Chem	2001

1 - 33 of 33

John Harry Caufield

American Heart Association, American Society for Microbiology, International Society for Computational Biology, Lawrence Berkeley National Laboratory, University of California Los Angeles, University of Delaware, Virginia Commonwealth University

Career Start Year 2012

Number of shared co-authors 2

Gergely Csaba

Ludwig-Maximilians-Universitat Munchen

Career Start Year 2007

Number of shared co-authors 0

Chad L Myers

University of Minnesota - Twin Cities

Career Start Year 2004

Number of shared co-authors 8

Toshiaki Katayama

Database Center for Life Science

Career Start Year 2004

Number of shared co-authors 2

Michael Riffle

University of Washington

Career Start Year 2003

Number of shared co-authors 0

Vera van Noort

Leiden University, Institute of Biology Leiden

Career Start Year 2003

Number of shared co-authors 0

Patrick Kemmeren

Princess Maxima Center for Pediatric Oncology

Career Start Year 2002

Number of shared co-authors 0

Lorrie Boucher

The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital

Career Start Year 2001

Number of shared co-authors 10

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 8

Bobby-Joe Breitkreutz

The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital

Career Start Year 2001

Number of shared co-authors 8

Amy Hin Yan Tong

University of Toronto

Career Start Year 1999

Number of shared co-authors 3

Matthew Pocock

Newcastle University

Career Start Year 1998

Number of shared co-authors 2

Frederick P Roth

University of Toronto

Career Start Year 1998

Number of shared co-authors 13

Lars M Steinmetz

Stanford University

Career Start Year 1998

Number of shared co-authors 3

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 9

Christopher T Workman

Technical University of Denmark

Career Start Year 1995

Number of shared co-authors 2

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 8

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 3

Edward M Marcotte

University of Texas

Career Start Year 1993

Number of shared co-authors 4

Marc R Wilkins

University of New South Wales

Career Start Year 1992

Number of shared co-authors 3

Ewan Birney

European Bioinformatics Institute

Career Start Year 1992

Number of shared co-authors 38

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 18

Nomi L Harris

Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University

Career Start Year 1990

Number of shared co-authors 66

Marc Vidal

Blavatnik Institute, Harvard Medical School

Career Start Year 1989

Number of shared co-authors 13

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Career Start Year 1986

Number of shared co-authors 27

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 32

Stanley Fields

University of Washington

Career Start Year 1985

Number of shared co-authors 5

Martin Kuiper

Norwegian University of Science and Technology

Career Start Year 1983

Number of shared co-authors 14

Darren A Natale

Georgetown University Medical Center

Career Start Year 1982

Number of shared co-authors 36

Charles Boone

University of Toronto

Career Start Year 1979

Number of shared co-authors 7

row(s) 1 - 30 of 30

J Michael Cherry

Stanford University

Co-authored papers 25

Benjamin C Hitz

Stanford University School of Medicine

Co-authored papers 15

Rama Balakrishnan

Genentech Inc.

Co-authored papers 14

Maria C Costanzo

The Broad Institute of Harvard and MIT

Co-authored papers 14

Stacia R Engel

Stanford University

Co-authored papers 13

Dianna G Fisk

Stanford Medicine Clinical Genomics Program

Co-authored papers 12

Gail Binkley

Stanford University

Co-authored papers 12

Selina S Dwight

Stanford University School of Medicine

Co-authored papers 11

Robert S Nash

Stanford University

Co-authored papers 11

Karen R Christie

Stanford University Medical School

Co-authored papers 11

Shuai Weng

Stanford University

Co-authored papers 11

David Botstein

Calico Life Sciences LLC

Co-authored papers 10

Julie Park

Stanford University

Co-authored papers 10

Kara Dolinski

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 10

Stuart R Miyasato

Stanford University

Co-authored papers 10

Jodi E Hirschman

Broad Institute of MIT and Harvard

Co-authored papers 9

Anand Sethuraman

Stanford University School of Medicine

Co-authored papers 8

Marek S Skrzypek

Stanford University

Co-authored papers 8

Jean M Davidson

Stanford University School of Medicine

Co-authored papers 7

Chandra L Theesfeld

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 7

Brian T Lee

Genomics Institute, University of California Santa Cruz

Co-authored papers 6

Venkat S Malladi

UT Southwestern Medical Center

Co-authored papers 6

Edith D Wong

Stanford University

Co-authored papers 6

Mark Schroeder

Co-authored papers 5

Idan Gabdank

Co-authored papers 5

Catherine A Ball

Co-authored papers 5

Rose Oughtred

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 5

J Seth Strattan

Co-authored papers 4

Kalpana Karra

Stanford University

Co-authored papers 4

Becket Feierbach

Gilead Sciences Inc.

Co-authored papers 3

1 - 30

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