Author details

Full Name

Andreas Bremges

Affiliation

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
33649565	Tutorial: assessing metagenomics software with the CAMI benchmarking toolkit.	Nat Protoc	2021
34281604	Haploflow: strain-resolved de novo assembly of viral genomes.	Genome Biol	2021
33532769	Haploflow: Strain-resolved <i>de novo</i> assembly of viral genomes.	bioRxiv	2021
32048461	Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning-enabled molecular diagnostics.	EMBO Mol Med	2020
31909794	CAMITAX: Taxon labels for microbial genomes.	Gigascience	2020
30832730	Assessing taxonomic metagenome profilers with OPAL.	Genome Biol	2019
30736849	CAMISIM: simulating metagenomes and microbial communities.	Microbiome	2019
29278726	Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome.	Journal of Biotechnology	2018
30003143	Critical Assessment of Metagenome Interpretation Enters the Second Round.	mSystems	2018
29205917	Targeted inÂ situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants.	Microb Biotechnol	2018
29158776	Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes.	Biotechnol Biofuels	2017
28417375	Metagenomics and CAZyme Discovery.	Methods Mol Biol	2017
28967888	Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.	Nat Methods	2017
28607432	Characterisation of a stable laboratory co-culture of acidophilic nanoorganisms.	Sci Rep	2017
29208961	Investigation of different nitrogen reduction routes and their key microbial players in wood chip-driven denitrification beds.	Sci Rep	2017
28066816	From Genomes to Phenotypes: Traitar, the Microbial Trait Analyzer.	mSystems	2016
27153586	MeCorS: Metagenome-enabled error correction of single cell sequencing reads.	Bioinformatics	2016
27060556	Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing.	J Biotechnol	2016
27165504	Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment.	J Biotechnol	2016
27312700	An integrated metagenome and -proteome analysis of the microbial community residing in a biogas production plant.	J Biotechnol	2016
27462367	Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants.	Biotechnol Biofuels	2016
27525040	Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates.	Biotechnol Biofuels	2016
26152594	Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities.	Proteomics	2015
26229594	Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant.	Gigascience	2015
26473029	Bioboxes: standardised containers for interchangeable bioinformatics software.	Gigascience	2015
24553071	Complete genome sequence of the cyanide-degrading bacterium Pseudomonas pseudoalcaligenes CECT5344.	J Biotechnol	2014
24312603	A silent exonic SNP in kdm3a affects nucleic acids structure but does not regulate experimental autoimmune encephalomyelitis.	PLoS ONE	2013
20433706	Fine-tuning structural RNA alignments in the twilight zone.	BMC Bioinformatics	2010