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Author Details

Edward M Marcotte
University of Texas
1993
225
74
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37398254Integrated modeling of the Nexin-dynein regulatory complex reveals its regulatory mechanism.bioRxiv2023
38082099SARS-COV-2 Omicron variants conformationally escape a rare quaternary antibody binding mode.Commun Biol2023
37714832Integrated modeling of the Nexin-dynein regulatory complex reveals its regulatory mechanism.Nat Commun2023
37745461Robust and scalable single-molecule protein sequencing with fluorosequencing.bioRxiv2023
37790497Systematic Profiling of Ale Yeast Protein Dynamics across Fermentation and Repitching.bioRxiv2023
37781579An amino acid-resolution interactome for motile cilia illuminates the structure and function of ciliopathy protein complexes.bioRxiv2023
37502879Estimating error rates for single molecule protein sequencing experiments.bioRxiv2023
37532987Molecular complex detection in protein interaction networks through reinforcement learning.BMC Bioinformatics2023
37061613Does AlphaFold2 model proteins' intracellular conformations? An experimental test using cross-linking mass spectrometry of endogenous ciliary proteins.Commun Biol2023
37323580Rapid, scalable, combinatorial genome engineering by marker-less enrichment and recombination of genetically engineered loci in yeast.Cell Rep Methods2023
37253025Amino acid sequence assignment from single molecule peptide sequencing data using a two-stage classifier.PLoS Comput Biol2023
36945534Label-free proteomic comparison reveals ciliary and non-ciliary phenotypes of IFT-A mutants.bioRxiv2023
34747468HumanNet v3: an improved database of human gene networks for disease research.Nucleic Acids Res2022
35476939ARVCF catenin controls force production during vertebrate convergent extension.Dev Cell2022
35610225Functional expression of opioid receptors and other human GPCRs in yeast engineered to produce human sterols.Nat Commun2022
35534633Understudied proteins: opportunities and challenges for functional proteomics.Nat Methods2022
35534555An open invitation to the Understudied Proteins Initiative.Nat Biotechnol2022
35622964Evaluating the Effect of Dye-Dye Interactions of Xanthene-Based Fluorophores in the Fluorosequencing of Peptides.Bioconjug Chem2022
35858567The protein organization of a red blood cell.Cell Rep2022
36346217Integrative modeling reveals the molecular architecture of the intraflagellar transport A (IFT-A) complex.Elife2022
34985940Protein Sequencing, One Molecule at a Time.Annu Rev Biophys2022
33476154Systematic Identification of Protein Phosphorylation-Mediated Interactions.J Proteome Res2021
33851158Synthetic repertoires derived from convalescent COVID-19 patients enable discovery of SARS-CoV-2 neutralizing antibodies and a novel quaternary binding modality.bioRxiv2021
33759266Improving integrative 3D modeling into low- to medium-resolution electron microscopy structures with evolutionary couplings.Protein Sci2021
33864778Spatiotemporal transcriptional dynamics of the cycling mouse oviduct.Dev Biol2021
33748783Co-fractionation/mass spectrometry to identify protein complexes.STAR Protoc2021
34849907Discovery of new vascular disrupting agents based on evolutionarily conserved drug action, pesticide resistance mutations, and humanized yeast.Genetics2021
34972161Super.Complex: A supervised machine learning pipeline for molecular complex detection in protein-interaction networks.PLoS One2021
34904833Studies of Surface Preparation for the Fluorosequencing of Peptides.Langmuir2021
34734691Photoredox-Catalyzed Decarboxylative <i>C</i>-Terminal Differentiation for Bulk- and Single-Molecule Proteomics.ACS Chem Biol2021
34099939The emerging landscape of single-molecule protein sequencing technologies.Nat Methods2021
33973408hu.MAP 2.0: integration of over 15,000 proteomic experiments builds a global compendium of human multiprotein assemblies.Mol Syst Biol2021
34189530Super.Complex: A supervised machine learning pipeline for molecular complex detection in protein-interaction networks.bioRxiv2021
33140424Simplified geometric representations of protein structures identify complementary interaction interfaces.Proteins2021
31416630Bringing Microscopy-By-Sequencing into View.Trends Biotechnol2020
31726096Separating distinct structures of multiple macromolecular assemblies from cryo-EM projections.J Struct Biol2020
31825225Synthesis of Carboxy ATTO 647N Using Redox Cycling for Xanthone Access.Org Lett2020
33263282Functional partitioning of a liquid-like organelle during assembly of axonemal dyneins.Elife2020
32673590Bringing Microscopy-By-Sequencing into View: (Trends in Biotechnology 38, 154-162, 2020).Trends Biotechnol2020
32421706Humanization of yeast genes with multiple human orthologs reveals functional divergence between paralogs.PLoS Biol2020
32363853Solid-Phase Peptide Capture and Release for Bulk and Single-Molecule Proteomics.ACS Chem Biol2020
32522745Systematic Humanization of the Yeast Cytoskeleton Discerns Functionally Replaceable from Divergent Human Genes.Genetics2020
32559382Next-Generation TLC: A Quantitative Platform for Parallel Spotting and Imaging.J Org Chem2020
32129706Abundances of transcripts, proteins, and metabolites in the cell cycle of budding yeast reveal coordinate control of lipid metabolism.Mol Biol Cell2020
32129623Structural Biology in the Multi-Omics Era.J Chem Inf Model2020
30418591HumanNet v2: human gene networks for disease research.Nucleic Acids Res2019
31753913Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity.Genes Dev2019
31658251Ancestral reconstruction of protein interaction networks.PLoS Comput Biol2019
30428072The Many Nuanced Evolutionary Consequences of Duplicated Genes.Mol Biol Evol2019
29320479Paternal chromosome loss and metabolic crisis contribute to hybrid inviability in Xenopus.Nature2018
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Collaborators

University of Texas
Co-authored papers 23
Center for Genomics and Systems Biology, New York University
Co-authored papers 17
university of california los angeles
Co-authored papers 11
University of Texas MD Anderson Cancer Center
Co-authored papers 10
University of Texas
Co-authored papers 9
Co-authored papers 9
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Co-authored papers 6
Co-authored papers 6
Boston University School of Medicine, Boston University
Co-authored papers 5
University of Lausanne
Co-authored papers 5
Department of Computer Sciences The University of Texas at Austin Austin
Co-authored papers 3
Indian Institute of Technology Bombay
Co-authored papers 3
University of Regina
Co-authored papers 3
University of Regina
Co-authored papers 3
University of California davis
Co-authored papers 3
University of Edinburgh
Co-authored papers 2
The Hospital for Sick Children
Co-authored papers 2
College Street, University of Toronto
Co-authored papers 2
Co-authored papers 2
University of Toronto, College Street
Co-authored papers 2
Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation
Co-authored papers 2
Stanford University School of Medicine, Center for Clinical Sciences Research
Co-authored papers 2
Charite - Universitatsmedizin Berlin
Co-authored papers 2
Lunenfeld-Tanenbaum Research Institute
Co-authored papers 2
Institute for Biotechnology, Technical University Berlin
Co-authored papers 2
university of california los angeles
Co-authored papers 2
Molloy University, NY The City University of New York School of Professional Studies
Co-authored papers 2
University of Cambridge
Co-authored papers 2
Carnegie Institution for Science
Co-authored papers 2
University of Toronto, University of Regina
Co-authored papers 2