Author details

Full Name

Jing Zhang

Affiliation

ORCID

Career Start Year

2015

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36449617	<i>DeepVelo</i>: Single-cell transcriptomic deep velocity field learning with neural ordinary differential equations.	Sci Adv	2022
35725981	Forest Fire Clustering for single-cell sequencing combines iterative label propagation with parallelized Monte Carlo simulations.	Nat Commun	2022
34252960	DECODE: a Deep-learning framework for Condensing enhancers and refining boundaries with large-scale functional assays.	Bioinformatics	2021
33471102	SCAN-ATAC-Sim: a scalable and efficient method for simulating single-cell ATAC-seq data from bulk-tissue experiments.	Bioinformatics	2021
32727537	RADAR: annotation and prioritization of variants in the post-transcriptional regulome of RNA-binding proteins.	Genome Biol	2020
33092526	NIMBus: a negative binomial regression based Integrative Method for mutation Burden Analysis.	BMC Bioinformatics	2020
32584815	Epigenome-based splicing prediction using a recurrent neural network.	PLoS Comput Biol	2020
33292397	STARRPeaker: uniform processing and accurate identification of STARR-seq active regions.	Genome Biol	2020
32728046	An integrative ENCODE resource for cancer genomics.	Nat Commun	2020
32615918	DiNeR: a Differential graphical model for analysis of co-regulation Network Rewiring.	BMC Bioinformatics	2020
30742093	MicroRNA-dependent regulation of biomechanical genes establishes tissue stiffness homeostasis.	Nat Cell Biol	2019
31469829	GRAM: A GeneRAlized Model to predict the molecular effect of a non-coding variant in a cell-type specific manner.	PLoS Genet	2019
29121169	MOAT: efficient detection of highly mutated regions with the Mutations Overburdening Annotations Tool.	Bioinformatics	2018
30545857	Comprehensive functional genomic resource and integrative model for the human brain.	Science	2018
30125121	Isoform-Level Interpretation of High-Throughput Proteomics Data Enabled by Deep Integration with RNA-seq.	J Proteome Res	2018
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition.	Genome Res	2017
28350988	MicroRNAs Establish Uniform Traits during the Architecture of Vertebrate Embryos.	Dev Cell	2017
27125642	Erratum to: The real cost of sequencing: scaling computation to keep pace with data generation.	Genome Biol	2016
27009100	The real cost of sequencing: scaling computation to keep pace with data generation.	Genome Biol	2016
26304545	LARVA: an integrative framework for large-scale analysis of recurrent variants in noncoding annotations.	Nucleic Acids Res	2015