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Author Details

John D Westbrook
The State University of New Jersey
1992
98
49
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36420884RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning.Nucleic Acids Res2023
36738985RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Models Alongside the PDB Structures Enabled by Architectural Advances.J Mol Biol2023
36828268ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models.J Mol Biol2023
34676613RCSB Protein Data Bank: Celebrating 50â¿¿years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D.Protein Sci2022
35460671PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology.J Mol Biol2022
36474933Electron microscopy holdings of the Protein Data Bank: the impact of the resolution revolution, new validation tools, and implications for the future.Biophys Rev2022
36291635Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students.Biomolecules2022
35026162Simplified quality assessment for small-molecule ligands in the Protein Data Bank.Structure2022
34864908RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB.Bioinformatics2022
34580920Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first 6 months of the COVID-19 pandemic.Proteins2022
33211854RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.Nucleic Acids Res2021
33657417Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank.Structure2021
34866606New system for archiving integrative structures.Acta Crystallogr D Struct Biol2021
33978738Modernized uniform representation of carbohydrate molecules in the Protein Data Bank.Glycobiology2021
33313665RCSB Protein Data Bank 1D tools and services.Bioinformatics2021
33186584RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive.J Mol Biol2021
31531901RCSB Protein Data Bank: Enabling biomedical research and drug discovery.Protein Sci2020
32068073Impact of the Protein Data Bank on antineoplastic approvals.Drug Discov Today2020
32409645The TRUST Principles for digital repositories.Sci Data2020
30357411RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy.Nucleic Acids Res2019
31780431Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures.Structure2019
31278630Archiving and disseminating integrative structure models.J Biomol NMR2019
30988261Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB).Acta Crystallogr D Struct Biol2019
30595456How Structural Biologists and the Protein Data Bank Contributed to Recent FDA New Drug Approvals.Structure2019
29067736RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education.Protein Sci2018
30617834Archiving of Integrative Structural Models.Adv Exp Med Biol2018
29688351Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data.Database (Oxford)2018
29657133Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules.Structure2018
27794042The RCSB protein data bank: integrative view of protein, gene and 3D structural information.Nucleic Acids Res2017
28190782OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive.Structure2017
28216043Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive.Structure2017
29174494Validation of Structures in the Protein Data Bank.Structure2017
288762352017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update.Acta Crystallogr D Struct Biol2017
27050687Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop.Structure2016
26578576EMDataBank unified data resource for 3DEM.Nucleic Acids Res2016
27275151<i>DCC</i>: a Swiss army knife for structure factor analysis and validation.J Appl Crystallogr2016
26937242Extension of the sasCIF format and its applications for data processing and deposition.J Appl Crystallogr2016
25610627Data to knowledge: how to get meaning from your result.IUCrJ2015
26095030Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop.Structure2015
26036565NMR Exchange Format: a unified and open standard for representation of NMR restraint data.Nat Struct Mol Biol2015
25428375The RCSB Protein Data Bank: views of structural biology for basic and applied research and education.Nucleic Acids Res2015
25540181The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank.Bioinformatics2015
24173824Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank.Biopolymers2014
24185695The Nucleic Acid Database: new features and capabilities.Nucleic Acids Res2014
23193259The RCSB Protein Data Bank: new resources for research and education.Nucleic Acids Res2013
24291661Chemical annotation of small and peptide-like molecules at the Protein Data Bank.Database (Oxford)2013
23747111Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB.Structure2013
22100312Indole RSK inhibitors. Part 1: discovery and initial SAR.Bioorg Med Chem Lett2012
23211764Data management challenges in three-dimensional EM.Nat Struct Mol Biol2012
22325770Outcome of the first electron microscopy validation task force meeting.Structure2012
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Collaborators

The State University of New Jersey
Co-authored papers 67
The State University of New Jersey
Co-authored papers 34
The State University of New Jersey
Co-authored papers 33
The State University of New Jersey
Co-authored papers 28
University of Virginia
Co-authored papers 20
The State University of New Jersey
Co-authored papers 19
The State University of New Jersey
Co-authored papers 18
Institute for Quantitative Biomedicine, State University of New Jersey
Co-authored papers 18
University of California San Francisco
Co-authored papers 16
The State University of New Jersey
Co-authored papers 16
European Bioinformatics Institute
Co-authored papers 15
The State University of New Jersey
Co-authored papers 15
The State University of New Jersey
Co-authored papers 14
The State University of New Jersey
Co-authored papers 13
University of California San Diego
Co-authored papers 13
The State University of New Jersey
Co-authored papers 13
University of Wisconsin-Madison
Co-authored papers 12
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 12
Institute for Quantitative Biomedicine, State University of New Jersey
Co-authored papers 12
University of California San Diego
Co-authored papers 11
University of Basel
Co-authored papers 11
The State University of New Jersey
Co-authored papers 10
The State University of New Jersey
Co-authored papers 10
The State University of New Jersey
Co-authored papers 9
The State University of New Jersey
Co-authored papers 8
Lawrence Berkeley National Laboratory
Co-authored papers 8
University of Wisconsin-Madison
Co-authored papers 8
Institute for Protein Research, Osaka University
Co-authored papers 8
The State University of New Jersey
Co-authored papers 8
The State University of New Jersey
Co-authored papers 8