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Author Details

Javier A Alfaro
International Centre for Cancer Vaccine Science, University of Gdansk
2008
25
13
PMIDPaper TitleJournal TitlePublished Year
36899164Sampling the proteome by emerging single-molecule and mass spectrometry methods.Nat Methods2023
37308510Unraveling the glycosylated immunopeptidome with HLA-Glyco.Nat Commun2023
36961404The Immunopeptidome from a Genomic Perspective: Establishing the Noncanonical Landscape of MHC Class I-Associated Peptides.Cancer Immunol Res2023
35668402Gorham-Stout case report: a multi-omic analysis reveals recurrent fusions as new potential drivers of the disease.BMC Med Genomics2022
34099939The emerging landscape of single-molecule protein sequencing technologies.Nat Methods2021
33491460MicroPOTS Analysis of Barrett's Esophageal Cell Line Models Identifies Proteomic Changes after Physiologic and Radiation Stress.J Proteome Res2021
33922087Functional Interfaces, Biological Pathways, and Regulations of Interferon-Related DNA Damage Resistance Signature (IRDS) Genes.Biomolecules2021
33806612Interfaces with Structure Dynamics of the Workhorses from Cells Revealed through Cross-Linking Mass Spectrometry (CLMS).Biomolecules2021
34645618Kinomics platform using GBM tissue identifies BTK as being associated with higher patient survival.Life Sci Alliance2021
34589184Structural determinants of peptide-dependent TAP1-TAP2 transit passage targeted by viral proteins and altered by cancer-associated mutations.Comput Struct Biotechnol J2021
32422996Highly Conserved Homotrimer Cavity Formed by the SARS-CoV-2 Spike Glycoprotein: A Novel Binding Site.J Clin Med2020
32244998Recognition Dynamics of Cancer Mutations on the ERp57-Tapasin Interface.Cancers (Basel)2020
32213869Nonsense-Mediated mRNA Decay: Pathologies and the Potential for Novel Therapeutics.Cancers (Basel)2020
32110973Mass Spectrometry-Based Identification of MHC-Associated Peptides.Cancers (Basel)2020
30889379The Proteogenomic Landscape of Curable Prostate Cancer.Cancer Cell2019
31718065Insights into the Effects of Cancer Associated Mutations at the UPF2 and ATP-Binding Sites of NMD Master Regulator: UPF1.Int J Mol Sci2019
29264800Proteomic Profiling of Secreted Proteins, Exosomes, and Microvesicles in Cell Culture Conditioned Media.Methods Mol Biol2018
28716134Detecting protein variants by mass spectrometry: a comprehensive study in cancer cell-lines.Genome Med2017
28150884Characterization of Protein Content Present in Exosomes Isolated from Conditioned Media and Urine.Curr Protoc Protein Sci2017
24265507pH-induced conformational changes in human ABO(H) blood group glycosyltransferases confirm the importance of electrostatic interactions in the formation of the semi-closed state.Glycobiology2014
25408883Aberrant DNA methylation reprogramming during induced pluripotent stem cell generation is dependent on the choice of reprogramming factors.Cell Regen2014
25240283Hotspot activating PRKD1 somatic mutations in polymorphous low-grade adenocarcinomas of the salivary glands.Nat Genet2014
25357240Onco-proteogenomics: cancer proteomics joins forces with genomics.Nat Methods2014
22349229Sequence-dependent effects of cryoprotectants on the active sites of the human ABO(H) blood group A and B glycosyltransferases.Acta Crystallogr D Biol Crystallogr2012
18192272ABO(H) blood group A and B glycosyltransferases recognize substrate via specific conformational changes.J Biol Chem2008
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Collaborators

Thomas Kislinger
Princess Margaret Cancer Centre, University Health Network, University of Toronto
Co-authored papers 6
Ankit Sinha
Max Planck Institute of Biochemistry
Co-authored papers 5
Paul C Boutros
University of California los angeles
Co-authored papers 4
Vladimir Ignatchenko
Margaret Cancer Center
Co-authored papers 3
David R Goodlett
University of Victoria
Co-authored papers 3
Alex Ignatchenko
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Salvatore Piscuoglio
University of Basel
Co-authored papers 1
Alena Sk??lov??
Charles University
Co-authored papers 1
Nikolai Slavov
and Barnett Institute, Northeastern University
Co-authored papers 1
Raja R Seethala
University of Pittsburgh Medical Center-Presbyterian
Co-authored papers 1
Mehdi Masoomian
University Health Network
Co-authored papers 1
Bayardo Perez-Ordonez
University Health Network
Co-authored papers 1
Jianxin Wang
Ontario Institute for Cancer Research
Co-authored papers 1
Hannah Y Wen
Memorial Sloan Kettering Cancer Center
Co-authored papers 1
Maciej Baginski
Co-authored papers 1
Luciano G Martelotto
Monash University
Co-authored papers 1
Anna Lapuk
Contextual Genomics Inc.
Co-authored papers 1
Ken J Kron
Princess Margaret Cancer Centre, University Health Network
Co-authored papers 1
Charlotte K Y Ng
University of Bern
Co-authored papers 1
Cindy Q Yao
Ontario Institute for Cancer Research
Co-authored papers 1
Michael Fraser
Princess Margaret Cancer Centre, University Health Network
Co-authored papers 1
Rita A Sakr
Universite Libre de Bruxelles
Co-authored papers 1
Christine C Wu
University of Washington
Co-authored papers 1
Alison Meynert
Institute of Genetics and Cancer, University of Edinburgh
Co-authored papers 1
Daryl Waggott
Ontario Institute for Cancer Research
Co-authored papers 1
Christopher J Howlett
Western University
Co-authored papers 1
Natalie S Fox
University of California los angeles
Co-authored papers 1
Lawrence E Heisler
Ontario Institute for Cancer Research
Co-authored papers 1
Michael J MacCoss
University of Washington
Co-authored papers 1
Robert G Bristow
University of Toronto
Co-authored papers 1
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