Author details

Full Name

Soohyun Lee

Affiliation

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
34415533	Hi-C Data Formats.	Methods in Molecular Biology	2022
35501320	The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data.	Nat Commun	2022
36323678	Author Correction: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data.	Nat Commun	2022
34838103	Whole-genome analysis reveals the contribution of non-coding de novo transposon insertions to autism spectrum disorder.	Mob DNA	2021
34158502	Comprehensive identification of transposable element insertions using multiple sequencing technologies.	Nat Commun	2021
34189515	Withdrawal: Update physical genomic information for commercial bovine SNP chip based on recent reference genome sequences (ARS-UCD1.2).	Journal of Animal Science and Technology	2021
33136153	HiTea: a computational pipeline to identify non-reference transposable element insertions in Hi-C data.	Bioinformatics	2021
33416869	BamSnap: a lightweight viewer for sequencing reads in BAM files.	Bioinformatics	2021
30686754	Loss of SLC25A11 causes suppression of NSCLC and melanoma tumor formation.	eBioMedicine	2019
31077294	Tibanna: software for scalable execution of portable pipelines on the cloud.	Bioinformatics	2019
30463244	Renal Cell Carcinoma Is Abrogated by p53 Stabilization through Transglutaminase 2 Inhibition.	Cancers	2018
30356107	Targeting Mitochondrial Oxidative Phosphorylation Abrogated Irinotecan Resistance in NSCLC.	Scientific Reports	2018
30143029	HiGlass: web-based visual exploration and analysis of genome interaction maps.	Genome Biol	2018
29988410	Functional Partitioning of Genomic Variance and Genome-Wide Association Study for Carcass Traits in Korean Hanwoo Cattle Using Imputed Sequence Level SNP Data.	Frontiers in Genetics	2018
29898899	Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data.	Genome Res	2018
28366588	DUSP9 Modulates DNA Hypomethylation in Female Mouse Pluripotent Stem Cells.	Cell Stem Cell	2017
28369524	NGSCheckMate: software for validating sample identity in next-generation sequencing studies within and across data types.	Nucleic Acids Res	2017
26675720	Corrigendum: Failure to replicate the STAP cell phenomenon.	Nature	2016
27153396	Analyzing Somatic Genome Rearrangements in Human Cancers by Using Whole-Exome Sequencing.	Am J Hum Genet	2016
26675727	Corrigendum: Hallmarks of pluripotency.	Nature	2016
26335049	EMSAR: estimation of transcript abundance from RNA-seq data by mappability-based segmentation and reclustering.	BMC Bioinformatics	2015
26399835	Failure to replicate the STAP cell phenomenon.	Nature	2015
26399828	Hallmarks of pluripotency.	Nature	2015
26430121	Somatic mutation in single human neurons tracks developmental and transcriptional history.	Science	2015
26501951	A comparison of genetically matched cell lines reveals the equivalence of human iPSCs and ESCs.	Nat Biotechnol	2015
25164756	Comparative analysis of metazoan chromatin organization.	Nature	2014
22927429	Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution.	Proceedings of the National Academy of Sciences of the United States of America	2012
21059678	Accurate quantification of transcriptome from RNA-Seq data by effective length normalization.	Nucleic Acids Research	2011
20535230	Relative codon adaptation index, a sensitive measure of codon usage bias.	Evolutionary Bioinformatics	2010
19395009	Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies.	Cell	2009
19732946	The Drosophila HP1 homolog Rhino is required for transposon silencing and piRNA production by dual-strand clusters.	Cell	2009
18403677	Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells.	Science	2008
19093001	Quantitative analysis of single nucleotide polymorphisms within copy number variation.	PLoS One	2008
16700068	The complete genome sequence of a dog: a perspective.	Bioessays	2006
16309559	Genes involved in complex adaptive processes tend to have highly conserved upstream regions in mammalian genomes.	BMC Genomics	2005
14764562	CHOISS for selection of single nucleotide polymorphism markers on interval regularity.	Bioinformatics	2004