Author details

Full Name

Robert J Woods

Affiliation

ORCID

Career Start Year

1984

Papers

155

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37493980	Protein-Ligand CH-Ï¿ Interactions: Structural Informatics, Energy Function Development, and Docking Implementation.		2023
37665626	Mono-phosphorylation at Ser4 of barrier-to-autointegration factor (Banf1) significantly reduces its DNA binding capability by inducing critical changes in its local conformation and DNA binding surface.		2023
37566472	Analysis: Probability Distributions of Molecular Torsion Angles in Solution from NMR Spectroscopy.		2023
36648443	Cataloging natural sialic acids and other nonulosonic acids (NulOs), and their representation using the Symbol Nomenclature for Glycans.	Glycobiology	2023
36631484	Simplifying the detection and monitoring of protein glycosylation during in vitro glycoengineering.		2023
35597280	O-fucosylation stabilizes the TSR3 motif in thrombospondin-1 by interacting with nearby amino acids and protecting a disulfide bond.	Journal of Biological Chemistry	2022
36191232	Computationally guided conversion of the specificity of E-selectin to mimic that of Siglec-8.	Proceedings of the National Academy of Sciences of the United States of America	2022
33273015	Hyper-truncated Asn355- and Asn391-glycans modulate the activity of neutrophil granule myeloperoxidase.	Journal of Biological Chemistry	2021
34127050	Landscape and selection of vaccine epitopes in SARS-CoV-2.	Genome Med	2021
33910736	Comparison of cellooligosaccharide conformations in complexes with proteins with energy maps for cellobiose.	Carbohydrate Polymers	2021
33683903	Heparan Sulfate Mimetics Differentially Affect Homologous Chemokines and Attenuate Cancer Development.	Journal of Medicinal Chemistry	2021
33889380	Discovery of rare sulfated -unsubstituted glucosamine based heparan sulfate analogs selectively activating chemokines.	Chemical Science	2021
33073996	PD-L1 Glycosylation and Its Impact on Binding to Clinical Antibodies.	Journal of Proteome Research	2021
32841605	Virus-Receptor Interactions of Glycosylated SARS-CoV-2 Spike and Human ACE2 Receptor.	Cell Host Microbe	2020
32188979	Effect of hydroxylysine-O-glycosylation on the structure of type I collagen molecule: A computational study.	Glycobiology	2020
32414843	A terminal Î±3-galactose modification regulates an E3 ubiquitin ligase subunit in Toxoplasma gondii.	J Biol Chem	2020
31616925	GlyGen: Computational and Informatics Resources for Glycoscience.	Glycobiology	2020
31616924	O-glycosylation on cerebrospinal fluid and plasma apolipoprotein E differs in the lipid-binding domain.	Glycobiology	2020
33376792	Hierarchical Multivalent Effects Control Influenza Host Specificity.	ACS Central Science	2020
32653452	Characterization of heparin and severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) spike glycoprotein binding interactions.	Antiviral Res	2020
32597425	Reconciling MA'AT and molecular dynamics models of linkage conformation in oligosaccharides.	Physical Chemistry Chemical Physics	2020
32929138	Analysis of the SARS-CoV-2 spike protein glycan shield reveals implications for immune recognition.	Scientific Reports	2020
32743578	Virus-Receptor Interactions of Glycosylated SARS-CoV-2 Spike and Human ACE2 Receptor.	bioRxiv	2020
32514069	Author Correction: Downstream Products are Potent Inhibitors of the Heparan Sulfate 2-O-Sulfotransferase.	Scientific Reports	2020
32908216	Allosteric regulation of lysosomal enzyme recognition by the cation-independent mannose 6-phosphate receptor.	Communications Biology	2020
32511307	Analysis of the SARS-CoV-2 spike protein glycan shield: implications for immune recognition.		2020
33007970	Directed Evolution of Therapeutic Antibodies Targeting Glycosylation in Cancer.	Cancers	2020
30861233	Corrigendum: Induction of Antibodies Directed Against Branched Core O-Mannosyl Glycopeptides-Selectivity Complimentary to the ConA Lectin.	Chemistry - A European Journal	2019
30605318	Use of Circular Statistics To Model Î±Man-(1â¿¿2)-Î±Man and Î±Man-(1â¿¿3)-Î±/Î²Man O-Glycosidic Linkage Conformation in C-Labeled Disaccharides and High-Mannose Oligosaccharides.	Biochemistry	2019
30597163	Fluorescent Trimeric Hemagglutinins Reveal Multivalent Receptor Binding Properties.	Journal of Molecular Biology	2019
30565163	Cross-Ring Fragmentation Patterns in the Tandem Mass Spectra of Underivatized Sialylated Oligosaccharides and Their Special Suitability for Spectrum Library Searching.	Journal of the American Society for Mass Spectrometry	2019
30624062	Synthesis and O-Glycosidic Linkage Conformational Analysis of C-Labeled Oligosaccharide Fragments of an Antifreeze Glycolipid.	Journal of Organic Chemistry	2019
31034888	NMR Resonance Assignment Methodology: Characterizing Large Sparsely Labeled Glycoproteins.	Journal of Molecular Biology	2019
31034567	GAG Builder: a web-tool for modeling 3D structures of glycosaminoglycans.	Glycobiology	2019
29431438	Applying Pose Clustering and MD Simulations To Eliminate False Positives in Molecular Docking.	Journal of Chemical Information and Modeling	2018
30018351	A combined computational-experimental approach to define the structural origin of antibody recognition of sialyl-Tn, a tumor-associated carbohydrate antigen.	Scientific Reports	2018
30302011	Structural Rearrangements Maintain the Glycan Shield of an HIV-1 Envelope Trimer After the Loss of a Glycan.	Scientific Reports	2018
30484253	Quantifying Weak Glycan-Protein Interactions Using a Biolayer Interferometry Competition Assay: Applications to ECL Lectin and X-31 Influenza Hemagglutinin.	Advances in Experimental Medicine and Biology	2018
30385505	Galectin binding to cells and glycoproteins with genetically modified glycosylation reveals galectin-glycan specificities in a natural context.	Journal of Biological Chemistry	2018
30091597	Predicting the Structures of Glycans, Glycoproteins, and Their Complexes.	Chemical Reviews	2018
30087361	Downstream Products are Potent Inhibitors of the Heparan Sulfate 2-O-Sulfotransferase.	Scientific Reports	2018
30086239	Defining the Specificity of Carbohydrate-Protein Interactions by Quantifying Functional Group Contributions.	Journal of Chemical Information and Modeling	2018
29491160	Enhanced Human-Type Receptor Binding by Ferret-Transmissible H5N1 with a K193T Mutation.	Journal of Virology	2018
29568255	Oligosaccharide model of the vascular endothelial glycocalyx in physiological flow.	Microfluid Nanofluidics	2018
29520710	A Traveling Wave Ion Mobility Spectrometry (TWIMS) Study of the Robo1-Heparan Sulfate Interaction.	J Am Soc Mass Spectrom	2018
27663556	Gas-Phase Analysis of the Complex of Fibroblast GrowthFactor 1 with Heparan Sulfate: A Traveling Wave Ion Mobility Spectrometry (TWIMS) and Molecular Modeling Study.	J Am Soc Mass Spectrom	2017
28434916	The Tetrameric Plant Lectin BanLec Neutralizes HIV through Bidentate Binding to Specific Viral Glycans.	Structure	2017
28340300	Synthesis of 3-O-Sulfated Oligosaccharides to Understand the Relationship between Structures and Functions of Heparan Sulfate.	Journal of the American Chemical Society	2017
28675835	New insights into influenza A specificity: an evolution of paradigms.	Current Opinion in Structural Biology	2017
28808025	Knee osteoarthritis has doubled in prevalence since the mid-20th century.	Proceedings of the National Academy of Sciences of the United States of America	2017