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Author Details

Lukas A Mueller
Boyce Thompson Institute (BTI)
2000
124
45
PMIDPaper TitleJournal TitlePublished Year
37226655Connecting data for consumer preferences, food quality, and breeding in support of market-oriented breeding of root, tuber, and banana crops.J Sci Food Agric2024
36986961MangoBase: A Genomics Portal and Gene Expression Atlas for <i>Mangifera indica</i>.Plants (Basel)2023
35317820Chromosome length genome assembly of the redbanded stink bug, Piezodorus guildinii (Westwood).BMC Res Notes2022
35411592A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity.Plant J2022
35676474Graph pangenome captures missing heritability and empowers tomato breeding.Nature2022
35666039Genome sequence for the blue-flowered Andean shrub Iochroma cyaneum reveals extensive discordance across the berry clade of Solanaceae.Plant Genome2022
35482489Lessons learned about the biology and genomics of Diaphorina citri infection with "Candidatus Liberibacter asiaticus" by integrating new and archived organ-specific transcriptome data.Gigascience2022
35413017Mucosal metabolites fuel the growth and virulence of E. coli linked to Crohn's disease.JCI Insight2022
35385099Breedbase: a digital ecosystem for modern plant breeding.G3 (Bethesda)2022
36824528Ubiquitin-proteasome pathway annotation in <i>Diaphorina citri</i> can reveal potential targets for RNAi-based pest management.GigaByte2022
36824529Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, <i>Diaphorina citri</i>.GigaByte2022
36824519Genomic identification, annotation, and comparative analysis of Vacuolar-type ATP synthase subunits in <i>Diaphorina citri</i>.GigaByte2022
36824510Annotation of glycolysis, gluconeogenesis, and trehaloneogenesis pathways provide insight into carbohydrate metabolism in the Asian citrus psyllid.GigaByte2022
36824511Annotation of Hox cluster and Hox cofactor genes in the Asian citrus psyllid, <i>Diaphorina citri</i>, reveals novel features.GigaByte2022
36135793Spatiotemporal dynamics of the tomato fruit transcriptome under prolonged water stress.Plant Physiol2022
33847871Correction to: Current status and impending progress for cassava structural genomics.Plant Mol Biol2022
33604743Current status and impending progress for cassava structural genomics.Plant Mol Biol2022
32662816Metabolic networks of the Nicotiana genus in the spotlight: content, progress and outlook.Brief Bioinform2021
36824346Utilizing a chromosomal-length genome assembly to annotate the Wnt signaling pathway in the Asian citrus psyllid, <i>Diaphorina citri</i>.GigaByte2021
36824344Annotation of <i>yellow</i> genes in <i>Diaphorina citri</i>, the vector for Huanglongbing disease.GigaByte2021
36824338Annotation of segmentation pathway genes in the Asian citrus psyllid, <i>Diaphorina citri</i>.GigaByte2021
36824334<i>In silico</i> characterization of chitin deacetylase genes in the <i>Diaphorina citri</i> genome.GigaByte2021
36824327Annotation of chitin biosynthesis genes in <i>Diaphorina citri</i>, the Asian citrus psyllid.GigaByte2021
33854089The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago.Sci Rep2021
33618672The 'Tommy Atkins' mango genome reveals candidate genes for fruit quality.BMC Plant Biol2021
34876620A population based expression atlas provides insights into disease resistance and other physiological traits in cassava (Manihot esculenta Crantz).Sci Rep2021
34956254Can Cross-Country Genomic Predictions Be a Reasonable Strategy to Support Germplasm Exchange? - A Case Study With Hydrogen Cyanide in Cassava.Front Plant Sci2021
33190608Draft Genome Sequence Resource of the Citrus Stem-End Rot Fungal Pathogen <i>Lasiodiplodia theobromae</i> CITRA15.Phytopathology2021
33164279Large-scale genome-wide association study, using historical data, identifies conserved genetic architecture of cyanogenic glucoside content in cassava (Manihot esculenta Crantz) root.Plant J2021
32377357Exploiting the diversity of tomato: the development of a phenotypically and genetically detailed germplasm collection.Hortic Res2020
31714620PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens.Plant J2020
31885275Longitudinal Transcriptomic, Proteomic, and Metabolomic Analyses of <i>Citrus sinensis</i> (L.) Osbeck Graft-Inoculated with "<i>Candidatus</i> Liberibacter asiaticus".J Proteome Res2020
32062333Reinterpretation of 'sperm pump' or 'sperm syringe' function with notes on other male internal reproductive organs in the Asian citrus psyllid, Diaphorina citri (Hemiptera: Liviidae).Arthropod Struct Dev2020
33199703Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding.Nat Commun2020
33205138The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems.Patterns (N Y)2020
33175872High density genotype storage for plant breeding in the Chado schema of Breedbase.PLoS One2020
32792560Comparative genomics of muskmelon reveals a potential role for retrotransposons in the modification of gene expression.Commun Biol2020
33022020Development on Citrus medica infected with 'Candidatus Liberibacter asiaticus' has sex-specific and -nonspecific impacts on adult Diaphorina citri and its endosymbionts.PLoS One2020
32694584Capsidiol-related genes are highly expressed in response to Colletotrichum scovillei during Capsicum annuum fruit development stages.Sci Rep2020
32338516Longitudinal Transcriptomic, Proteomic, and Metabolomic Analysis of <i>Citrus limon</i> Response to Graft Inoculation by <i>Candidatus Liberibacter asiaticus</i>.J Proteome Res2020
30820572Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community.Database (Oxford)2019
30951101Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitative Trait Loci Detection.Plant Genome2019
30943207A quick guide for student-driven community genome annotation.PLoS Comput Biol2019
31167834<i>De Novo</i> Genome Sequence Assembly of Dwarf Coconut (<i>Cocos nucifera</i> L. 'Catigan Green Dwarf') Provides Insights into Genomic Variation Between Coconut Types and Related Palm Species.G3 (Bethesda)2019
29112324De novo assembly of the zucchini genome reveals a whole-genome duplication associated with the origin of the Cucurbita genus.Plant Biotechnol J2018
29967517Fern genomes elucidate land plant evolution and cyanobacterial symbioses.Nat Plants2018
29959091Asian citrus psyllid stylet morphology and applicability to the model for inter-instar stylet replacement in the potato psyllid.Arthropod Struct Dev2018
29497436Structure and Distribution of Centromeric Retrotransposons at Diploid and Allotetraploid <i>Coffea</i> Centromeric and Pericentromeric Regions.Front Plant Sci2018
29762652SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases.Database (Oxford)2018
29371663High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening.Nat Commun2018
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Collaborators

Boyce Thompson Institute
Co-authored papers 27
Boyce Thompson Institute (BTI)
Co-authored papers 16
Kansas State University
Co-authored papers 15
USDA-ARS
Co-authored papers 15
Kansas State University
Co-authored papers 13
Carnegie Institution for Science
Co-authored papers 10
Pangea Systems Inc., USA and Marine Biological Laboratory
Co-authored papers 8
Boyce Thompson Institute
Co-authored papers 8
University of California berkeley
Co-authored papers 7
Kansas State University
Co-authored papers 7
Carnegie Institution for Science
Co-authored papers 5
Carnegie Institution for Science
Co-authored papers 4
Carnegie Institution for Science
Co-authored papers 4
USDA ARS, Subtropical Insects and Horticulture Research Unit
Co-authored papers 4
University of Colorado Anschutz Medical Campus
Co-authored papers 3
Co-authored papers 3
Co-authored papers 3
Co-authored papers 3
Co-authored papers 3
Samuel Roberts Noble Foundation
Co-authored papers 3
Co-authored papers 2
The Scripps Research Institute
Co-authored papers 2
Co-authored papers 2
USDA Agricultural Research Service
Co-authored papers 2
University of Texas Southwestern Medical Center
Co-authored papers 2
Clinical Research Division, Fred Hutchinson Cancer Center
Co-authored papers 2
Co-authored papers 2
University of Tennessee Health Science Center
Co-authored papers 2
University of Washington
Co-authored papers 2
Baylor College of Medicine Human Genome Sequencing Center
Co-authored papers 2