Author details

Full Name

Dzmitry Padhorny

Affiliation

ORCID

Career Start Year

2016

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36755019	Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT.	Nat Commun	2023
37905971	Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.	Proteins	2023
38077000	MHC-Fine: Fine-tuned AlphaFold for Precise MHC-Peptide Complex Prediction.	bioRxiv	2023
37697630	Accurate ligand-protein docking in CASP15 using the ClusPro LigTBM server.	Proteins	2023
36580595	Opinion: Protein folds vs. protein folding: Differing questions, different challenges.	Proc Natl Acad Sci U S A	2023
34890135	Side-chain Packing Using SE(3)-Transformer.	Pac Symp Biocomput	2022
35647916	Elucidation of protein function using computational docking and hotspot analysis by ClusPro and FTMap.	Acta Crystallogr D Struct Biol	2022
35831314	Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery.	Nat Commun	2022
34368994	Assessing the binding properties of CASP14 targets and models.	Proteins	2021
33417854	Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2.	Mol Cell	2021
33259812	Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2.	Mol Cell	2020
32142178	ClusPro in rounds 38 to 45 of CAPRI: Toward combining template-based methods with free docking.	Proteins	2020
31891416	Modeling beta-sheet peptide-protein interactions: Rosetta FlexPepDock in CAPRI rounds 38-45.	Proteins	2020
31879831	Sampling and refinement protocols for template-based macrocycle docking: 2018 D3R Grand Challenge 4.	J Comput Aided Mol Des	2020
31444975	Template-based modeling by ClusPro in CASP13 and the potential for using co-evolutionary information in docking.	Proteins	2019
31612567	Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.	Proteins	2019
30421350	Monte Carlo on the manifold and MD refinement for binding pose prediction of protein-ligand complexes: 2017 D3R Grand Challenge.	J Comput Aided Mol Des	2019
29101520	Protein-ligand docking using FFT based sampling: D3R case study.	J Comput Aided Mol Des	2018
30081098	Glucose regulation in the methylotrophic yeast Hansenula (Ogataea) polymorpha is mediated by a putative transceptor Gcr1.	Int J Biochem Cell Biol	2018
28079879	The ClusPro web server for protein-protein docking.	Nat Protoc	2017
27771482	ClusPro-DC: Dimer Classification by the Cluspro Server for Protein-Protein Docking.	J Mol Biol	2017
27412858	Protein-protein docking by fast generalized Fourier transforms on 5D rotational manifolds.	Proc Natl Acad Sci U S A	2016