| 37831628 | The rapid radiation of Bomarea (Alstroemeriaceae: Liliales), driven by the rise of the Andes. | Evolution | 2024 |
| 36579665 | Linking Ecological Specialization to Its Macroevolutionary Consequences: An Example with Passerine Nest Type. | Syst Biol | 2023 |
| 37792319 | Comprehensive phylogenomic time tree of bryophytes reveals deep relationships and uncovers gene incongruences in the last 500 million years of diversification. | Am J Bot | 2023 |
| 36762011 | Phylogenomic assessment prompts recognition of the Serianthes clade and confirms the monophyly of <i>Serianthes</i> and its relationship with <i>Falcataria</i> and <i>Wallaceodendron</i> in the wider ingoid clade (Leguminosae, Caesalpinioideae). | PhytoKeys | 2022 |
| 35646035 | An NGS-Based Phylogeny of Orthotricheae (Orthotrichaceae, Bryophyta) With the Proposal of the New Genus <i>Rehubryum</i> From Zealandia. | Front Plant Sci | 2022 |
| 34193417 | Gene-rich UV sex chromosomes harbor conserved regulators of sexual development. | Sci Adv | 2021 |
| 33552748 | A target enrichment probe set for resolving the flagellate land plant tree of life. | Appl Plant Sci | 2021 |
| 34787901 | Pith width, leaf size, and twig thickness. | Am J Bot | 2021 |
| 32330422 | Tempo and Pattern of Avian Brain Size Evolution. | Curr Biol | 2020 |
| 32041869 | The uncharacterized gene <i>EVE</i> contributes to vessel element dimensions in <i>Populus</i>. | Proc Natl Acad Sci U S A | 2020 |
| 32552108 | Dispersal Predicts Hybrid Zone Widths across Animal Diversity: Implications for Species Borders under Incomplete Reproductive Isolation. | Am Nat | 2020 |
| 31617595 | Interaction among ploidy, breeding system and lineage diversification. | New Phytol | 2019 |
| 29732265 | Extraction of phenotypic traits from taxonomic descriptions for the tree of life using natural language processing. | Appl Plant Sci | 2018 |
| 29915344 | Tempo and timing of ecological trait divergence in bird speciation. | Nat Ecol Evol | 2018 |
| 30239709 | Assessing the Performance of Ks Plots for Detecting Ancient Whole Genome Duplications. | Genome Biol Evol | 2018 |
| 29730880 | Community assembly of the ferns of Florida. | Am J Bot | 2018 |
| 29603138 | A roadmap for global synthesis of the plant tree of life. | Am J Bot | 2018 |
| 29739321 | Comparison of the Chinese bamboo partridge and red Junglefowl genome sequences highlights the importance of demography in genome evolution. | BMC Genomics | 2018 |
| 29732267 | chromploid: An R package for chromosome number evolution across the plant tree of life. | Appl Plant Sci | 2018 |
| 28444194 | Evolution of the 3R-MYB Gene Family in Plants. | Genome Biol Evol | 2017 |
| 28295270 | Testing the association of phenotypes with polyploidy: An example using herbaceous and woody eudicots. | Evolution | 2017 |
| 26988251 | Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data. | Genome Biol Evol | 2016 |
| 27206462 | Evaluating the role of genome downsizing and size thresholds from genome size distributions in angiosperms. | Am J Bot | 2016 |
| 27547523 | Effects of 16S rDNA sampling on estimates of the number of endosymbiont lineages in sucking lice. | PeerJ | 2016 |
| 25273112 | MulRF: a software package for phylogenetic analysis using multi-copy gene trees. | Bioinformatics | 2015 |
| 26385966 | Synthesis of phylogeny and taxonomy into a comprehensive tree of life. | Proc Natl Acad Sci U S A | 2015 |
| 26553259 | Erratum to: The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms. | BMC Evol Biol | 2015 |
| 25699217 | MatrixConverter: Facilitating construction of phenomic character matrices. | Appl Plant Sci | 2015 |
| 25463749 | Deep phylogenetic incongruence in the angiosperm clade Rosidae. | Mol Phylogenet Evol | 2015 |
| 25550149 | Building the avian tree of life using a large-scale, sparse supermatrix. | Mol Phylogenet Evol | 2015 |
| 25540456 | Assessing approaches for inferring species trees from multi-copy genes. | Syst Biol | 2015 |
| 25562316 | Finding our way through phenotypes. | PLoS Biol | 2015 |
| 24533922 | From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes. | BMC Evol Biol | 2014 |
| 25625010 | Data access for the 1,000 Plants (1KP) project. | Gigascience | 2014 |
| 25355905 | Phylotranscriptomic analysis of the origin and early diversification of land plants. | Proc Natl Acad Sci U S A | 2014 |
| 25018762 | Duplications and losses in gene families of rust pathogens highlight putative effectors. | Front Plant Sci | 2014 |
| 24810994 | Scombroid fishes provide novel insights into the trait/rate associations of molecular evolution. | J Mol Evol | 2014 |
| 23356627 | Recurrent evolution of dioecy in bryophytes. | Evolution | 2013 |
| 24407302 | Efficient algorithms for knowledge-enhanced supertree and supermatrix phylogenetic problems. | IEEE/ACM Trans Comput Biol Bioinform | 2013 |
| 24180377 | Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance. | Algorithms Mol Biol | 2013 |
| 23827969 | Next-generation phenomics for the Tree of Life. | PLoS Curr | 2013 |
| 23629845 | Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach. | Am J Bot | 2013 |
| 22431553 | Fast local search for unrooted Robinson-Foulds supertrees. | IEEE/ACM Trans Comput Biol Bioinform | 2012 |
| 23033843 | A scalable method for identifying frequent subtrees in sets of large phylogenetic trees. | BMC Bioinformatics | 2012 |
| 22759417 | Consensus properties for the deep coalescence problem and their application for scalable tree search. | BMC Bioinformatics | 2012 |
| 22759416 | Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence. | BMC Bioinformatics | 2012 |
| 22810428 | Explaining differences in the lifespan and replicative capacity of cells: a general model and comparative analysis of vertebrates. | Proc Biol Sci | 2012 |
| 22649181 | Assessing parameter identifiability in phylogenetic models using data cloning. | Syst Biol | 2012 |
| 22334342 | Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life. | Syst Biol | 2012 |
| 21186249 | Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees. | Syst Biol | 2011 |