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Author Details

John Gordon Burleigh
University of Florida
2003
72
30
PMIDPaper TitleJournal TitlePublished Year
37831628The rapid radiation of Bomarea (Alstroemeriaceae: Liliales), driven by the rise of the Andes.Evolution2024
36579665Linking Ecological Specialization to Its Macroevolutionary Consequences: An Example with Passerine Nest Type.Syst Biol2023
37792319Comprehensive phylogenomic time tree of bryophytes reveals deep relationships and uncovers gene incongruences in the last 500 million years of diversification.Am J Bot2023
36762011Phylogenomic assessment prompts recognition of the Serianthes clade and confirms the monophyly of <i>Serianthes</i> and its relationship with <i>Falcataria</i> and <i>Wallaceodendron</i> in the wider ingoid clade (Leguminosae, Caesalpinioideae).PhytoKeys2022
35646035An NGS-Based Phylogeny of Orthotricheae (Orthotrichaceae, Bryophyta) With the Proposal of the New Genus <i>Rehubryum</i> From Zealandia.Front Plant Sci2022
34193417Gene-rich UV sex chromosomes harbor conserved regulators of sexual development.Sci Adv2021
33552748A target enrichment probe set for resolving the flagellate land plant tree of life.Appl Plant Sci2021
34787901Pith width, leaf size, and twig thickness.Am J Bot2021
32330422Tempo and Pattern of Avian Brain Size Evolution.Curr Biol2020
32041869The uncharacterized gene <i>EVE</i> contributes to vessel element dimensions in <i>Populus</i>.Proc Natl Acad Sci U S A2020
32552108Dispersal Predicts Hybrid Zone Widths across Animal Diversity: Implications for Species Borders under Incomplete Reproductive Isolation.Am Nat2020
31617595Interaction among ploidy, breeding system and lineage diversification.New Phytol2019
29732265Extraction of phenotypic traits from taxonomic descriptions for the tree of life using natural language processing.Appl Plant Sci2018
29915344Tempo and timing of ecological trait divergence in bird speciation.Nat Ecol Evol2018
30239709Assessing the Performance of Ks Plots for Detecting Ancient Whole Genome Duplications.Genome Biol Evol2018
29730880Community assembly of the ferns of Florida.Am J Bot2018
29603138A roadmap for global synthesis of the plant tree of life.Am J Bot2018
29739321Comparison of the Chinese bamboo partridge and red Junglefowl genome sequences highlights the importance of demography in genome evolution.BMC Genomics2018
29732267chromploid: An R package for chromosome number evolution across the plant tree of life.Appl Plant Sci2018
28444194Evolution of the 3R-MYB Gene Family in Plants.Genome Biol Evol2017
28295270Testing the association of phenotypes with polyploidy: An example using herbaceous and woody eudicots.Evolution2017
26988251Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data.Genome Biol Evol2016
27206462Evaluating the role of genome downsizing and size thresholds from genome size distributions in angiosperms.Am J Bot2016
27547523Effects of 16S rDNA sampling on estimates of the number of endosymbiont lineages in sucking lice.PeerJ2016
25273112MulRF: a software package for phylogenetic analysis using multi-copy gene trees.Bioinformatics2015
26385966Synthesis of phylogeny and taxonomy into a comprehensive tree of life.Proc Natl Acad Sci U S A2015
26553259Erratum to: The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms.BMC Evol Biol2015
25699217MatrixConverter: Facilitating construction of phenomic character matrices.Appl Plant Sci2015
25463749Deep phylogenetic incongruence in the angiosperm clade Rosidae.Mol Phylogenet Evol2015
25550149Building the avian tree of life using a large-scale, sparse supermatrix.Mol Phylogenet Evol2015
25540456Assessing approaches for inferring species trees from multi-copy genes.Syst Biol2015
25562316Finding our way through phenotypes.PLoS Biol2015
24533922From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes.BMC Evol Biol2014
25625010Data access for the 1,000 Plants (1KP) project.Gigascience2014
25355905Phylotranscriptomic analysis of the origin and early diversification of land plants.Proc Natl Acad Sci U S A2014
25018762Duplications and losses in gene families of rust pathogens highlight putative effectors.Front Plant Sci2014
24810994Scombroid fishes provide novel insights into the trait/rate associations of molecular evolution.J Mol Evol2014
23356627Recurrent evolution of dioecy in bryophytes.Evolution2013
24407302Efficient algorithms for knowledge-enhanced supertree and supermatrix phylogenetic problems.IEEE/ACM Trans Comput Biol Bioinform2013
24180377Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance.Algorithms Mol Biol2013
23827969Next-generation phenomics for the Tree of Life.PLoS Curr2013
23629845Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach.Am J Bot2013
22431553Fast local search for unrooted Robinson-Foulds supertrees.IEEE/ACM Trans Comput Biol Bioinform2012
23033843A scalable method for identifying frequent subtrees in sets of large phylogenetic trees.BMC Bioinformatics2012
22759417Consensus properties for the deep coalescence problem and their application for scalable tree search.BMC Bioinformatics2012
22759416Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence.BMC Bioinformatics2012
22810428Explaining differences in the lifespan and replicative capacity of cells: a general model and comparative analysis of vertebrates.Proc Biol Sci2012
22649181Assessing parameter identifiability in phylogenetic models using data cloning.Syst Biol2012
22334342Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life.Syst Biol2012
21186249Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees.Syst Biol2011
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Collaborators

Department of Biology University of Florida Gainesville Florida USA.
Co-authored papers 4
University of British Columbia
Co-authored papers 3
University of California San Diego
Co-authored papers 3
University of Arizona
Co-authored papers 3
Stony Brook University
Co-authored papers 2
University of Marburg
Co-authored papers 2
Critical Path Institute
Co-authored papers 2
Co-authored papers 2
Cornell University
Co-authored papers 2
University of Kansas
Co-authored papers 2
CNRS, Sorbonne Universite, Universite des Antilles) Paris France.
Co-authored papers 1
University of Portsmouth
Co-authored papers 1
The Pennsylvania State University, University Park
Co-authored papers 1
Biodiversity Information Standards, Coastal and Estuarine Research Federation, Oregon State University, Phycological Society of America, Society of Professional Consultants, The Data Detektiv, University of Colorado Anschutz Medical Campus, University of Maryland College Park, Women in the Enterprise of Science and Technology
Co-authored papers 1
University of Cambridge
Co-authored papers 1
Co-authored papers 1
Texas A&M University, College Station
Co-authored papers 1
The Pennsylvania State University, University Park
Co-authored papers 1
Oregon State University
Co-authored papers 1
Institut fur Zell- und Systembiologie der Tiere, Universitat Hamburg
Co-authored papers 1
University of Delhi
Co-authored papers 1
Duke University
Co-authored papers 1
University of Florida, University of Florida Gainesville
Co-authored papers 1
Oregon State University
Co-authored papers 1
Agriculture and Agri-Food Canada
Co-authored papers 1
Institut fur Biowissenschaften, Universitat Rostock, Universitatsplatz 2
Co-authored papers 1
Lund University
Co-authored papers 1
Co-authored papers 1
Institute of Ecology and Botany, Institute of Ecology and Botany Budapest Hungary.
Co-authored papers 1
Institut Systematique, CNRS
Co-authored papers 1