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Author Details

Ching-Tai Chen
Asia University
2006
19
12
PMIDPaper TitleJournal TitlePublished Year
37644119Improving quantitation accuracy in isobaric-labeling mass spectrometry experiments with spectral library searching and feature-based peptide-spectrum match filter.Sci Rep2023
35132134Calibr improves spectral library search for spectrum-centric analysis of data independent acquisition proteomics.Sci Rep2022
33500498Multi-Q 2 software facilitates isobaric labeling quantitation analysis with improved accuracy and coverage.Sci Rep2021
32649875Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and Progression.Cell2020
31305071WinProphet: A User-Friendly Pipeline Management System for Proteomics Data Analysis Based on Trans-Proteomic Pipeline.Anal Chem2019
31874640MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks.BMC Genomics2019
31685900N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding.Sci Rep2019
31429573<i>i</i>HPDM: In Silico Human Proteome Digestion Map with Proteolytic Peptide Analysis and Graphical Visualizations.J Proteome Res2019
29165996iTop-Q: an Intelligent Tool for Top-down Proteomics Quantitation Using DYAMOND Algorithm.Anal Chem2017
26784691iMet-Q: A User-Friendly Tool for Label-Free Metabolomics Quantitation Using Dynamic Peak-Width Determination.PLoS One2016
27604469An expanded evaluation of protein function prediction methods shows an improvement in accuracy.Genome Biol2016
27084943MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification.Nucleic Acids Res2016
26549055Informatics View on the Challenges of Identifying Missing Proteins from Shotgun Proteomics.J Proteome Res2015
22457753Rationalization and design of the complementarity determining region sequences in an antibody-antigen recognition interface.PLoS One2012
22701576Protein-protein interaction site predictions with three-dimensional probability distributions of interacting atoms on protein surfaces.PLoS One2012
22848404Prediction of carbohydrate binding sites on protein surfaces with 3-dimensional probability density distributions of interacting atoms.PLoS One2012
19958518Protein subcellular localization prediction of eukaryotes using a knowledge-based approach.BMC Bioinformatics2009
18974075Protease substrate site predictors derived from machine learning on multilevel substrate phage display data.Bioinformatics2008
17245815HYPLOSP: a knowledge-based approach to protein local structure prediction.J Bioinform Comput Biol2006
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Collaborators

Ting-Yi Sung
School of Pharmacy, College of Medicine, National Taiwan University
Co-authored papers 13
Wen-Lian Hsu
Institute of Information Science
Co-authored papers 13
Hui-Yin Chang
Co-authored papers 4
Yu-Ju Chen
Institute of Chemistry
Co-authored papers 3
Christopher Funk
University of Colorado School of Medicine
Co-authored papers 1
Kevin Bryson
University of Glasgow
Co-authored papers 1
Asaf Salamov
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 1
Wei Ning
ShanghaiTech University
Co-authored papers 1
Lakesh Kansakar
Temple University
Co-authored papers 1
Prajwal Bhat
Royal Holloway University of London
Co-authored papers 1
Marco Mesiti
Universita degli Studi di Milano
Co-authored papers 1
Sanja Glisic
Vinca Institute of Nuclear Sciences, The University of Belgrade
Co-authored papers 1
Angela Del Pozo
Instituto de Genetica Medica y Molecular (INGEMM), Hospital Universitario La Paz
Co-authored papers 1
Maria J Martin
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
Christophe Dessimoz
University of Lausanne
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Kai Hakala
University of Turku
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Domenico Cozzetto
Imperial College London
Co-authored papers 1
Amos Stern
Life Science Institute
Co-authored papers 1
Shanshan Zhang
Temple University
Co-authored papers 1
Marina Marcet-Houben
Institute for Research in Biomedicine (IRB)
Co-authored papers 1
Hans J Vogel
University of Calgary
Co-authored papers 1
Pooya Zakeri
Aarhus University
Co-authored papers 1
Alfredo Benso
Italy Consorzio Interuniversitario Nazionale per l'Informatica
Co-authored papers 1
Federico Minneci
University College London
Co-authored papers 1
Elena Cibri??n-Uhalte
European Bioinformatics Institute
Co-authored papers 1
Malvika Sharan
The Alan Turing Institute
Co-authored papers 1
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 1
Dan Ofer
Tel Aviv University
Co-authored papers 1
Veljko Veljkovic
Institute of Nuclear Sciences VINCA
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Yves Moreau
KU Leuven - University of Leuven
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