Author details

Full Name

Simon Jupp

Affiliation

European Bioinformatics Institute (EMBL-EBI)

ORCID

Career Start Year

2009

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37264430	Features of a FAIR vocabulary.	J Biomed Semantics	2023
37264430	Features of a FAIR vocabulary.	J Biomed Semantics	2023
35380605	ELIXIR biovalidator for semantic validation of life science metadata.	Bioinformatics	2022
35380605	ELIXIR biovalidator for semantic validation of life science metadata.	Bioinformatics	2022
35616100	A Simple Standard for Sharing Ontological Mappings (SSSOM).	Database (Oxford)	2022
35616100	A Simple Standard for Sharing Ontological Mappings (SSSOM).	Database (Oxford)	2022
33045747	Open Targets Genetics: systematic identification of trait-associated genes using large-scale genetics and functional genomics.	Nucleic Acids Res	2021
33692568	The Polygenic Score Catalog as an open database for reproducibility and systematic evaluation.	Nat Genet	2021
33045747	Open Targets Genetics: systematic identification of trait-associated genes using large-scale genetics and functional genomics.	Nucleic Acids Res	2021
34493866	A compendium of uniformly processed human gene expression and splicing quantitative trait loci.	Nat Genet	2021
33692568	The Polygenic Score Catalog as an open database for reproducibility and systematic evaluation.	Nat Genet	2021
34493866	A compendium of uniformly processed human gene expression and splicing quantitative trait loci.	Nat Genet	2021
31665515	Expression Atlas update: from tissues to single cells.	Nucleic Acids Res	2020
31665515	Expression Atlas update: from tissues to single cells.	Nucleic Acids Res	2020
31158512	Ontology mapping for semantically enabled applications.	Drug Discov Today	2019
31766582	The Hearing Impairment Ontology: A Tool for Unifying Hearing Impairment Knowledge to Enhance Collaborative Research.	Genes (Basel)	2019
31158512	Ontology mapping for semantically enabled applications.	Drug Discov Today	2019
31766582	The Hearing Impairment Ontology: A Tool for Unifying Hearing Impairment Knowledge to Enhance Collaborative Research.	Genes (Basel)	2019
29425702	Harmonising phenomics information for a better interoperability in the rare disease field.	Eur J Med Genet	2018
29425702	Harmonising phenomics information for a better interoperability in the rare disease field.	Eur J Med Genet	2018
28792687	OLS Client and OLS Dialog: Open Source Tools to Annotate Public Omics Datasets.	Proteomics	2017
28662064	Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.	PLoS Biol	2017
28792687	OLS Client and OLS Dialog: Open Source Tools to Annotate Public Omics Datasets.	Proteomics	2017
29322915	Comparison, alignment, and synchronization of cell line information between CLO and EFO.	BMC Bioinformatics	2017
29322915	Comparison, alignment, and synchronization of cell line information between CLO and EFO.	BMC Bioinformatics	2017
28662064	Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.	PLoS Biol	2017
27047653	Developing a web-based SKOS editor.	J Biomed Semantics	2016
27195102	The cellular microscopy phenotype ontology.	J Biomed Semantics	2016
27011785	Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation.	J Biomed Semantics	2016
27047653	Developing a web-based SKOS editor.	J Biomed Semantics	2016
26867217	Ten Simple Rules for Selecting a Bio-ontology.	PLoS Comput Biol	2016
27042287	Webulous and the Webulous Google Add-On--a web service and application for ontology building from templates.	J Biomed Semantics	2016
27354937	Proceedings of a Sickle Cell Disease Ontology workshop - Towards the first comprehensive ontology for Sickle Cell Disease.	Appl Transl Genom	2016
26481351	Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.	Nucleic Acids Res	2016
27602295	The health care and life sciences community profile for dataset descriptions.	PeerJ	2016
26481351	Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.	Nucleic Acids Res	2016
27602295	The health care and life sciences community profile for dataset descriptions.	PeerJ	2016
27354937	Proceedings of a Sickle Cell Disease Ontology workshop - Towards the first comprehensive ontology for Sickle Cell Disease.	Appl Transl Genom	2016
27195102	The cellular microscopy phenotype ontology.	J Biomed Semantics	2016
27042287	Webulous and the Webulous Google Add-On--a web service and application for ontology building from templates.	J Biomed Semantics	2016
27011785	Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation.	J Biomed Semantics	2016
26867217	Ten Simple Rules for Selecting a Bio-ontology.	PLoS Comput Biol	2016
24413672	The EBI RDF platform: linked open data for the life sciences.	Bioinformatics	2014
24304889	Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.	Nucleic Acids Res	2014
24413672	The EBI RDF platform: linked open data for the life sciences.	Bioinformatics	2014
24304889	Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.	Nucleic Acids Res	2014
23883183	The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases.	BMC Bioinformatics	2013
23883183	The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases.	BMC Bioinformatics	2013
22373396	Populous: a tool for building OWL ontologies from templates.	BMC Bioinformatics	2012
22345404	The KUPKB: a novel Web application to access multiomics data on kidney disease.	FASEB J	2012

1 - 50 of 62

Aravind Venkatesan

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2010

Number of shared co-authors 5

Jie Zheng

University of Pennsylvania Perelman School of Medicine

Career Start Year 2010

Number of shared co-authors 21

Seth Carbon

Lawrence Berkeley National Laboratory

Career Start Year 2009

Number of shared co-authors 40

Jun Zhao

Oxford University

Career Start Year 2009

Number of shared co-authors 15

Christopher J O Baker

University of New Brunswick

Career Start Year 2007

Number of shared co-authors 10

Helena F Deus

Elsevier Inc.

Career Start Year 2006

Number of shared co-authors 4

Mathias Brochhausen

College of Medicine, University of Arkansas for Medical Sciences

Career Start Year 2006

Number of shared co-authors 11

Daniel Schober

Institute of Forensic Medicine, University of Bern

Career Start Year 2005

Number of shared co-authors 18

Larisa N Soldatova

University of London

Career Start Year 2005

Number of shared co-authors 16

Erick Antezana

Norwegian University of Science and Technology

Career Start Year 2004

Number of shared co-authors 18

Jesualdo Tom??s Fern??ndez-Breis

Universidad de Murcia

Career Start Year 2004

Number of shared co-authors 11

Dietrich Rebholz-Schuhmann

University of Cologne

Career Start Year 2003

Number of shared co-authors 15

Alan Ruttenberg

University at Buffalo

Career Start Year 2003

Number of shared co-authors 27

Barry Smith

University at Buffalo

Career Start Year 2003

Number of shared co-authors 32

Rebecca E Foulger

Queen Mary University of London

Career Start Year 2003

Number of shared co-authors 16

Benjamin M Good

Lawrence Berkeley National Laboratory

Career Start Year 2003

Number of shared co-authors 15

Georgios V Gkoutos

Institute of Cancer and Genomic Sciences, University of Birmingham

Career Start Year 2000

Number of shared co-authors 22

Michael Bada

Center for Health AI, University of Colorado Anschutz Medical Campus

Career Start Year 2000

Number of shared co-authors 14

Marco Roos

Leiden University Medical Center

Career Start Year 1999

Number of shared co-authors 32

Karen Eilbeck

University of Utah

Career Start Year 1999

Number of shared co-authors 32

Andra Waagmeester

Maastricht University

Career Start Year 1998

Number of shared co-authors 16

Lynn M Schriml

University of Maryland School of Medicine, Institute for Genome Sciences

Career Start Year 1998

Number of shared co-authors 32

Yasunori Yamamoto

Database Center for Life Science, Joint Support-Center for Data Science Research

Career Start Year 1997

Number of shared co-authors 28

Suzanna E Lewis

Lawrence Berkeley National Laboratory

Career Start Year 1996

Number of shared co-authors 44

Mark D Wilkinson

Universidad Politecnica de Madrid (UPM)

Career Start Year 1993

Number of shared co-authors 24

Patricia L Whetzel

University of Colorado Anschutz Medical Campus

Career Start Year 1993

Number of shared co-authors 38

Lawrence E Hunter

University of Colorado School of Medicine

Career Start Year 1993

Number of shared co-authors 4

Kei-Hoi Cheung

Yale University School of Medicine

Career Start Year 1992

Number of shared co-authors 9

Phillip Lord

Newcastle University

Career Start Year 1991

Number of shared co-authors 18

Alexander D Diehl

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 1986

Number of shared co-authors 23

row(s) 1 - 30 of 30

Helen Parkinson

European Bioinformatics Institute

Co-authored papers 13

Robert Stevens

The University of Manchester

Co-authored papers 9

James Malone

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 9

Tony Burdett

European Bioinformatics Institute

Co-authored papers 8

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 5

Melissa A Haendel

Co-authored papers 5

Julie A McMurry

University of Colorado - Anschutz Medical Campus

Co-authored papers 3

Sarala M Wimalaratne

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 3

Camille Laibe

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 3

Alvis Brazma

European Bioinformatics Institute

Co-authored papers 3

Robert Petryszak

Oregon Health and Science University

Co-authored papers 3

M??lanie Courtot

Ontario Institute for Cancer Research

Co-authored papers 3

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 3

Nicolas Le Nov??re

Babraham Institute

Co-authored papers 3

Alasdair J G Gray

Heriot-Watt University

Co-authored papers 3

Eleanor Williams

University of Dundee

Co-authored papers 3

Nick Juty

University of Manchester