Author details

Full Name

Minoru Kanehisa

Affiliation

ORCID

Career Start Year

1972

Papers

240

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37881892	KEGG tools for classification and analysis of viral proteins.		2023
36300620	KEGG for taxonomy-based analysis of pathways and genomes.	Nucleic Acids Research	2023
34423492	KEGG mapping tools for uncovering hidden features in biological data.	Protein Science	2022
33125081	KEGG: integrating viruses and cellular organisms.	Nucleic Acids Research	2021
31423653	KEGG Mapper for inferring cellular functions from protein sequences.	Protein Science	2020
31742321	KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold.		2020
31441146	Toward understanding the origin and evolution of cellular organisms.	Protein Science	2019
30321428	New approach for understanding genome variations in KEGG.	Nucleic Acids Research	2019
30030815	Inferring Antimicrobial Resistance from Pathogen Genomes in KEGG.	Methods in Molecular Biology	2018
27899662	KEGG: new perspectives on genomes, pathways, diseases and drugs.	Nucleic Acids Research	2017
28451977	Enzyme Annotation and Metabolic Reconstruction Using KEGG.	Methods in Molecular Biology	2017
28445522	Revealing phenotype-associated functional differences by genome-wide scan of ancient haplotype blocks.	PLoS ONE	2017
26585406	BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences.	Journal of Molecular Biology	2016
26822930	Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs.	J Chem Inf Model	2016
26519400	KEGG Bioinformatics Resource for Plant Genomics and Metabolomics.	Methods in Molecular Biology	2016
26476454	KEGG as a reference resource for gene and protein annotation.	Nucleic Acids Research	2016
26543186	Symbol Nomenclature for Graphical Representations of Glycans.	Glycobiology	2015
25753705	Glycomic analysis using KEGG GLYCAN.	Methods in Molecular Biology	2015
24838565	DINIES: drug-target interaction network inference engine based on supervised analysis.	Nucleic Acids Research	2014
25385078	PIERO ontology for analysis of biochemical transformations: effective implementation of reaction information in the IUBMB enzyme list.	J Bioinform Comput Biol	2014
24214961	Data, information, knowledge and principle: back to metabolism in KEGG.	Nucleic Acids Research	2014
24127042	Pathways of Toxicity.	ALTEX	2014
24564846	KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics.	BMC Systems Biology	2013
23816707	Chemical and genomic evolution of enzyme-catalyzed reaction networks.	FEBS Letters	2013
23193276	KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters.	Nucleic Acids Res	2013
23192552	Molecular network analysis of diseases and drugs in KEGG.	Methods in Molecular Biology	2013
23384306	Modular architecture of metabolic pathways revealed by conserved sequences of reactions.	Journal of Chemical Information and Modeling	2013
22080510	KEGG for integration and interpretation of large-scale molecular data sets.	Nucleic Acids Research	2012
22700311	Using the KEGG database resource.	Current Protocols in Bioinformatics	2012
22951932	Comparative genome analysis of three eukaryotic parasites with differing abilities to transform leukocytes reveals key mediators of Theileria-induced leukocyte transformation.	mBio	2012
22610856	GENIES: gene network inference engine based on supervised analysis.	Nucleic Acids Research	2012
23234305	Evaluation method for the potential functionome harbored in the genome and metagenome.	BMC Genomics	2012
22149683	Population model-based inter-diplotype similarity measure for accurate diplotype clustering.	Journal of Computational Biology	2012
22130871	The KEGG databases and tools facilitating omics analysis: latest developments involving human diseases and pharmaceuticals.	Methods in Molecular Biology	2012
21546551	iPath2.0: interactive pathway explorer.	Nucleic Acids Res	2011
22373367	MUCHA: multiple chemical alignment algorithm to identify building block substructures of orphan secondary metabolites.	BMC Bioinformatics	2011
21097783	KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data.	Nucleic Acids Research	2011
21942936	Network-based analysis and characterization of adverse drug-drug interactions.	Journal of Chemical Information and Modeling	2011
22081587	Characterizing common substructures of ligands for GPCR protein subfamilies.	Genome Inform	2010
19539588	varDB: a database of antigenic variant sequences--current status and future prospects.	Acta Tropica	2010
20529913	Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework.		2010
20435670	PathPred: an enzyme-catalyzed metabolic pathway prediction server.	Nucleic Acids Research	2010
19880382	KEGG for representation and analysis of molecular networks involving diseases and drugs.	Nucleic Acids Research	2010
20460463	SIMCOMP/SUBCOMP: chemical structure search servers for network analyses.	Nucleic Acids Research	2010
20153838	Characterization of alpha-phosphoglucomutase isozymes from Toxoplasma gondii.	Parasitol Int	2010
20238429	Analysis of a lipid biosynthesis protein family and phospholipid structural variations.	Genome informatics. International Conference on Genome Informatics	2010
20238427	Characterization and classification of adverse drug interactions.	Genome informatics. International Conference on Genome Informatics	2010
20238424	New kernel methods for phenotype prediction from genotype data.	Genome informatics. International Conference on Genome Informatics	2010
22081600	Integer programming-based method for completing signaling pathways and its application to analysis of colorectal cancer.	Genome informatics. International Conference on Genome Informatics	2010
22081595	Genome-wide analysis of plant UGT family based on sequence and substrate information.	Genome informatics. International Conference on Genome Informatics	2010