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Author Details

Kristen Jepsen
Institute for Genomic Medicine, University of California San Diego
1998
53
32
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37751740RANK ligand converts the NCoR/HDAC3 co-repressor to a PGC1β- and RNA-dependent co-activator of osteoclast gene expression.Mol Cell2023
37751740RANK ligand converts the NCoR/HDAC3 co-repressor to a PGC1β- and RNA-dependent co-activator of osteoclast gene expression.Mol Cell2023
35027560The breast pre-cancer atlas illustrates the molecular and micro-environmental diversity of ductal carcinoma in situ.NPJ Breast Cancer2022
35699291Absolute quantification of plasma mitochondrial DNA by droplet digital PCR marks COVID-19 severity over time during intensive care unit admissions.Am J Physiol Lung Cell Mol Physiol2022
35798029Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.Nature2022
35547202Multi-Site Observational Study to Assess Biomarkers for Susceptibility or Resilience to Chronic Pain: The Acute to Chronic Pain Signatures (A2CPS) Study Protocol.Front Med (Lausanne)2022
35411350Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission.medRxiv2022
36316474Nuclear corepressors NCOR1/NCOR2 regulate B cell development, maintain genomic integrity and prevent transformation.Nat Immunol2022
35332213The ViReflow pipeline enables user friendly large scale viral consensus genome reconstruction.Sci Rep2022
35027560The breast pre-cancer atlas illustrates the molecular and micro-environmental diversity of ductal carcinoma in situ.NPJ Breast Cancer2022
35411350Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission.medRxiv2022
35547202Multi-Site Observational Study to Assess Biomarkers for Susceptibility or Resilience to Chronic Pain: The Acute to Chronic Pain Signatures (A2CPS) Study Protocol.Front Med (Lausanne)2022
35798029Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.Nature2022
35699291Absolute quantification of plasma mitochondrial DNA by droplet digital PCR marks COVID-19 severity over time during intensive care unit admissions.Am J Physiol Lung Cell Mol Physiol2022
36316474Nuclear corepressors NCOR1/NCOR2 regulate B cell development, maintain genomic integrity and prevent transformation.Nat Immunol2022
35332213The ViReflow pipeline enables user friendly large scale viral consensus genome reconstruction.Sci Rep2022
33665346Differential blood DNA methylation across Lewy body dementias.Alzheimers Dement (Amst)2021
33665346Differential blood DNA methylation across Lewy body dementias.Alzheimers Dement (Amst)2021
32520957IRE1α regulates macrophage polarization, PD-L1 expression, and tumor survival.PLoS Biol2020
33208147Mutational profiling of micro-dissected pre-malignant lesions from archived specimens.BMC Med Genomics2020
33370871An iPSC line derived from a human acute myeloid leukemia cell line (HL-60-iPSC) retains leukemic abnormalities and displays myeloid differentiation defects.Stem Cell Res2020
32520957IRE1α regulates macrophage polarization, PD-L1 expression, and tumor survival.PLoS Biol2020
32892750The wild grape genome sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication.Genome Biol2020
33370871An iPSC line derived from a human acute myeloid leukemia cell line (HL-60-iPSC) retains leukemic abnormalities and displays myeloid differentiation defects.Stem Cell Res2020
33208147Mutational profiling of micro-dissected pre-malignant lesions from archived specimens.BMC Med Genomics2020
32892750The wild grape genome sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication.Genome Biol2020
30871403DNA methylation changes associated with Parkinson's disease progression: outcomes from the first longitudinal genome-wide methylation analysis in blood.Epigenetics2019
31739201Two iPSC lines generated from the bone marrow of a relapsed/refractory AML patient display normal karyotypes and myeloid differentiation potential.Stem Cell Res2019
31672156Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads.Genome Biol2019
30871403DNA methylation changes associated with Parkinson's disease progression: outcomes from the first longitudinal genome-wide methylation analysis in blood.Epigenetics2019
31216480TCF1 and LEF1 Control Treg Competitive Survival and Tfr Development to Prevent Autoimmune Diseases.Cell Rep2019
31672156Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads.Genome Biol2019
31739201Two iPSC lines generated from the bone marrow of a relapsed/refractory AML patient display normal karyotypes and myeloid differentiation potential.Stem Cell Res2019
31216480TCF1 and LEF1 Control Treg Competitive Survival and Tfr Development to Prevent Autoimmune Diseases.Cell Rep2019
29378911Massively Parallel Sequencing of Peritoneal and Splenic B Cell Repertoires Highlights Unique Properties of B-1 Cell Antibodies.J Immunol2018
30514916Extracellular vesicles produced in B cells deliver tumor suppressor miR-335 to breast cancer cells disrupting oncogenic programming in vitro and in vivo.Sci Rep2018
29703133Cross-site comparison of ribosomal depletion kits for Illumina RNAseq library construction.BMC Genomics2018
29378911Massively Parallel Sequencing of Peritoneal and Splenic B Cell Repertoires Highlights Unique Properties of B-1 Cell Antibodies.J Immunol2018
30514916Extracellular vesicles produced in B cells deliver tumor suppressor miR-335 to breast cancer cells disrupting oncogenic programming in vitro and in vivo.Sci Rep2018
29703133Cross-site comparison of ribosomal depletion kits for Illumina RNAseq library construction.BMC Genomics2018
28410642iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types.Stem Cell Reports2017
28388430Large-Scale Profiling Reveals the Influence of Genetic Variation on Gene Expression in Human Induced Pluripotent Stem Cells.Cell Stem Cell2017
28410642iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types.Stem Cell Reports2017
28388430Large-Scale Profiling Reveals the Influence of Genetic Variation on Gene Expression in Human Induced Pluripotent Stem Cells.Cell Stem Cell2017
27105112Methylome-wide Analysis of Chronic HIV Infection Reveals Five-Year Increase in Biological Age and Epigenetic Targeting of HLA.Mol Cell2016
27105112Methylome-wide Analysis of Chronic HIV Infection Reveals Five-Year Increase in Biological Age and Epigenetic Targeting of HLA.Mol Cell2016
25356967Consanguinity and rare mutations outside of MCCC genes underlie nonspecific phenotypes of MCCD.Genet Med2015
25667416Immunodeficiency and autoimmune enterocolopathy linked to NFAT5 haploinsufficiency.J Immunol2015
25356967Consanguinity and rare mutations outside of MCCC genes underlie nonspecific phenotypes of MCCD.Genet Med2015
25860294Genetic and epigenetic profiling of CLL disease progression reveals limited somatic evolution and suggests a relationship to memory-cell development.Blood Cancer J2015
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Collaborators

Kelly A Frazer
University of California, USA Institute for Genomic Medicine
Co-authored papers 16
Michael G Rosenfeld
University of California San Diego
Co-authored papers 14
Olivier Harismendy
University of California
Co-authored papers 11
Christopher K Glass
University of California San Diego
Co-authored papers 9
Erin N Smith
Department of Pediatrics and Rady's Children's Hospital, University of California
Co-authored papers 8
Kathleen M Fisch
Center for Computational Biology and Bioinformatics, University of California
Co-authored papers 6
Mahdieh Khosroheidari
Institute for Genomic Medicine, University of California San Diego
Co-authored papers 5
Gene W Yeo
University of California
Co-authored papers 5
Christopher DeBoever
Stanford University
Co-authored papers 5
Thomas J Kipps
University of California San Diego
Co-authored papers 4
Richard B Schwab
Department of Medicine and Moores Cancer Center, University of California San Diego
Co-authored papers 4
Laura Z Rassenti
University of California San Diego
Co-authored papers 4
Niema Moshiri
Bonita Vista High School, University of California San Diego, University of California, San Diego
Co-authored papers 3
Gregory Humphrey
University of California
Co-authored papers 3
Andrew M Lowy
University of California San Diego
Co-authored papers 3
Amanda Birmingham
Center for Computational Biology & Bioinformatics , University of California
Co-authored papers 3
Smruthi Karthikeyan
California Institute of Technology
Co-authored papers 2
Daniel McDonald
University of California San Diego
Co-authored papers 2
Clarisse Marotz
University of California San Diego
Co-authored papers 2
Ian McHardy
University of California, Davis Center for Valley Fever
Co-authored papers 2
Adam Buckley
Imperial College London Diabetes Centre
Co-authored papers 2
David T Pride
University of California San Diego
Co-authored papers 2
Stephen F Kingsmore
Rady Children's Institute for Genomic Medicine
Co-authored papers 2
Angela L Scioscia
University of California San Diego
Co-authored papers 2
Edyth Parker
The Scripps Research Institute
Co-authored papers 2
Hannah Carter
University of California San Diego
Co-authored papers 2
David Dimmock
Rady Children's Institute for Genomic Medicine
Co-authored papers 2
Alison Sanders
University of California San Diego
Co-authored papers 2
Steven L Gonias
University of California san francisco
Co-authored papers 2
John T Chang
University of California San Diego
Co-authored papers 2
Release 1.2