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Author Details

Chris T Evelo
Maastricht University
1984
178
39
Timothy Clark (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37941138WikiPathways 2024: next generation pathway database.Nucleic Acids Res2024
37941138WikiPathways 2024: next generation pathway database.Nucleic Acids Res2024
37961844Interactive neuroinflammation pathways and transcriptomics-based identification of drugs and chemical compounds for schizophrenia.World J Biol Psychiatry2024
37961844Interactive neuroinflammation pathways and transcriptomics-based identification of drugs and chemical compounds for schizophrenia.World J Biol Psychiatry2024
36864534PSnpBind-ML: predicting the effect of binding site mutations on protein-ligand binding affinity.J Cheminform2023
37842337ELIXIR and Toxicology: a community in development.F1000Res2023
37872602Exploring pathway interactions to detect molecular mechanisms of disease: 22q11.2 deletion syndrome.Orphanet J Rare Dis2023
37208467The FAIR Cookbook - the essential resource for and by FAIR doers.Sci Data2023
36864534PSnpBind-ML: predicting the effect of binding site mutations on protein-ligand binding affinity.J Cheminform2023
37101200Extending inherited metabolic disorder diagnostics with biomarker interaction visualizations.Orphanet J Rare Dis2023
37423508A data reusability assessment in the nanosafety domain based on the NSDRA framework followed by an exploratory quantitative structure activity relationships (QSAR) modeling targeting cellular viability.NanoImpact2023
37842337ELIXIR and Toxicology: a community in development.F1000Res2023
37872602Exploring pathway interactions to detect molecular mechanisms of disease: 22q11.2 deletion syndrome.Orphanet J Rare Dis2023
37423508A data reusability assessment in the nanosafety domain based on the NSDRA framework followed by an exploratory quantitative structure activity relationships (QSAR) modeling targeting cellular viability.NanoImpact2023
37208467The FAIR Cookbook - the essential resource for and by FAIR doers.Sci Data2023
37101200Extending inherited metabolic disorder diagnostics with biomarker interaction visualizations.Orphanet J Rare Dis2023
35295213The AOP-DB RDF: Applying FAIR Principles to the Semantic Integration of AOP Data Using the Research Description Framework.Front Toxicol2022
35388368Providing Adverse Outcome Pathways from the AOP-Wiki in a Semantic Web Format to Increase Usability and Accessibility of the Content.Appl In Vitro Toxicol2022
35436299Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions.PLoS One2022
35558518A Community-Driven, Openly Accessible Molecular Pathway Integrating Knowledge on Malignant Pleural Mesothelioma.Front Oncol2022
35616100A Simple Standard for Sharing Ontological Mappings (SSSOM).Database (Oxford)2022
36189295Tissue-specific pathway activities: A retrospective analysis in COVID-19 patients.Front Immunol2022
36742342Systems Biology in ELIXIR: modelling in the spotlight.F1000Res2022
35295213The AOP-DB RDF: Applying FAIR Principles to the Semantic Integration of AOP Data Using the Research Description Framework.Front Toxicol2022
34850562Impact of In Utero Folate Exposure on DNA Methylation and Its Potential Relevance for Later-Life Health-Evidence from Mouse Models Translated to Human Cohorts.Mol Nutr Food Res2022
35227289PSnpBind: a database of mutated binding site protein-ligand complexes constructed using a multithreaded virtual screening workflow.J Cheminform2022
35124177A systematically derived overview of the non-ubiquitous pathways and genes that define the molecular and genetic signature of the healthy trabecular meshwork.Genomics2022
35616100A Simple Standard for Sharing Ontological Mappings (SSSOM).Database (Oxford)2022
35436299Understanding signaling and metabolic paths using semantified and harmonized information about biological interactions.PLoS One2022
35388368Providing Adverse Outcome Pathways from the AOP-Wiki in a Semantic Web Format to Increase Usability and Accessibility of the Content.Appl In Vitro Toxicol2022
35558518A Community-Driven, Openly Accessible Molecular Pathway Integrating Knowledge on Malignant Pleural Mesothelioma.Front Oncol2022
36742342Systems Biology in ELIXIR: modelling in the spotlight.F1000Res2022
36189295Tissue-specific pathway activities: A retrospective analysis in COVID-19 patients.Front Immunol2022
35227289PSnpBind: a database of mutated binding site protein-ligand complexes constructed using a multithreaded virtual screening workflow.J Cheminform2022
35124177A systematically derived overview of the non-ubiquitous pathways and genes that define the molecular and genetic signature of the healthy trabecular meshwork.Genomics2022
34850562Impact of In Utero Folate Exposure on DNA Methylation and Its Potential Relevance for Later-Life Health-Evidence from Mouse Models Translated to Human Cohorts.Mol Nutr Food Res2022
32928582Blunted nutrient-response pathways in adipose tissue following high fat meals in men with metabolic syndrome: A randomized postprandial transcriptomic study.Clin Nutr2021
34014916Ten simple rules to make your publication look better.PLoS Comput Biol2021
33785437Tolerogenic effects of 1,25-dihydroxyvitamin D on dendritic cells involve induction of fatty acid synthesis.J Steroid Biochem Mol Biol2021
33947870A resource to explore the discovery of rare diseases and their causative genes.Sci Data2021
33452270A catalogue of 863 Rett-syndrome-causing MECP2 mutations and lessons learned from data integration.Sci Data2021
34136521Assessing the Contribution of Relative Macrophage Frequencies to Subcutaneous Adipose Tissue.Front Nutr2021
34185408Integrative multiomics analysis of human atherosclerosis reveals a serum response factor-driven network associated with intraplaque hemorrhage.Clin Transl Med2021
32928582Blunted nutrient-response pathways in adipose tissue following high fat meals in men with metabolic syndrome: A randomized postprandial transcriptomic study.Clin Nutr2021
33211851WikiPathways: connecting communities.Nucleic Acids Res2021
34502343Investigating the Molecular Processes behind the Cell-Specific Toxicity Response to Titanium Dioxide Nanobelts.Int J Mol Sci2021
34664389COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
34886800An interferon-related signature characterizes the whole blood transcriptome profile of insulin-resistant individuals-the CODAM study.Genes Nutr2021
34939300COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.Mol Syst Biol2021
34748535Comparison of metabolic states using genome-scale metabolic models.PLoS Comput Biol2021
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Collaborators

Egon L Willighagen
Maastricht University
Co-authored papers 32
Michiel E Adriaens
Maastricht University
Co-authored papers 24
Alexander R Pico
Institute of Data Science and Biotechnology, Gladstone Institutes
Co-authored papers 19
Thomas Kelder
Maastricht University
Co-authored papers 15
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Gladstone Institutes
Co-authored papers 14
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Maastricht University
Co-authored papers 14
Carole Goble
University of Manchester
Co-authored papers 7
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Gladstone Institutes
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Philippe Rocca-Serra
University of Oxford
Co-authored papers 6
Henning Hermjakob
European Bioinformatics Institute (EMBL-EBI)
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Oxford e-Research Centre, University of Oxford
Co-authored papers 5
Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 5
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Heriot-Watt University
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Leiden Institute of Advanced Computer Science, Leiden University
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Department of Pharmaceutical Biosciences, Uppsala University
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Leiden Institute for FAIR and Equitable Science
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Jos C S Kleinjans
Maastricht University
Co-authored papers 4
Emek Demir
Knight Cancer Institute, Oregon Health & Science University
Co-authored papers 4
Charles Auffray
European Institute for Systems Biology and Medicine
Co-authored papers 4
Hiroaki Kitano
Co-authored papers 4
Emmanuel Barillot
Institut Curie, Universite PSL
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Marco Roos
Leiden University Medical Center
Co-authored papers 4
Marc Gillespie
Ontario Institute for Cancer Research
Co-authored papers 4
Reinhard Schneider
Co-authored papers 4
Barend Mons
Leiden University Medical Center
Co-authored papers 3
Paul Groth
University of Amsterdam
Co-authored papers 3
Christoph Steinbeck
Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena
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Release 1.2