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Author Details

Lynn M Schriml
University of Maryland School of Medicine, Institute for Genome Sciences
1998
83
35
Timothy Clark (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37953304The DO-KB Knowledgebase: a 20-year journey developing the disease open science ecosystem.Nucleic Acids Res2024
36373660CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase.Nucleic Acids Res2023
37102710Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report.Astrobiology2023
36856688Assessing resource use: a case study with the Human Disease Ontology.Database (Oxford)2023
36829165Modeling the enigma of complex disease etiology.J Transl Med2023
34755882The Human Disease Ontology 2022 update.Nucleic Acids Res2022
37632753The founding charter of the Omic Biodiversity Observation Network (Omic BON).Gigascience2022
37938691MIxS-SA: a MIxS extension defining the minimum information standard for sequence data from symbiont-associated micro-organisms.ISME Commun2022
35579551A decade of GigaScience: 10 years of the evolving genomic and biomedical standards landscape.Gigascience2022
35624339A community approach to the cancer-variant-interpretation bottleneck.Nat Cancer2022
36812614Diseasomics: Actionable machine interpretable disease knowledge at the point-of-care.PLOS Digit Health2022
36299999A history of the MetaSUB consortium: Tracking urban microbes around the globe.iScience2022
35042807Darwinian genomics and diversity in the tree of life.Proc Natl Acad Sci U S A2022
34637759Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association.Environ Res2022
33947809Correction for Vangay et al., "Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities".mSystems2021
33622857Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities.mSystems2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
34697637OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.Database (Oxford)2021
34478655Response to Biesecker et al.Am J Hum Genet2021
34015823COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model.Brief Bioinform2021
32561801COVID-19 pandemic reveals the peril of ignoring metadata standards.Sci Data2020
32246132A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer.Nat Genet2020
32180547Wikidata as a knowledge graph for the life sciences.Elife2020
30407550Human Disease Ontology 2018 update: classification, content and workflow expansion.Nucleic Acids Res2019
31600339Parasite microbiome project: Grand challenges.PLoS Pathog2019
30679363Toward unrestricted use of public genomic data.Science2019
30556814Minimum Information about an Uncultivated Virus Genome (MIUViG).Nat Biotechnol2019
30407590ECO, the Evidence & Conclusion Ontology: community standard for evidence information.Nucleic Acids Res2019
29590633Disease Ontology: improving and unifying disease annotations across species.Dis Model Mech2018
29979671Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.Nat Biotechnol2018
31304272FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration.NPJ Sci Food2018
29406516Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.Nat Biotechnol2018
28787424Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.Nat Biotechnol2017
28337070Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).J Biomol Tech2017
28350385Molecular, phenotypic, and sample-associated data to describe pluripotent stem cell lines and derivatives.Sci Data2017
26989148Wikidata as a semantic framework for the Gene Wiki initiative.Database (Oxford)2016
27293150Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell Biology Consortium.Stem Cell Reports2016
25348409Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data.Nucleic Acids Res2015
26119816The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease.Am J Hum Genet2015
26093607The Disease Ontology: fostering interoperability between biological and clinical human disease-related data.Mamm Genome2015
25841438Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis.Database (Oxford)2015
24152717MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment.ISME J2014
25197446Genomic standards consortium projects.Stand Genomic Sci2014
24936976Standardized metadata for human pathogen/vector genomic sequences.PLoS One2014
22080554Disease Ontology: a backbone for disease semantic integration.Nucleic Acids Res2012
23451294RCN4GSC Workshop Report: Managing Data at the Interface of Biodiversity and (Meta)Genomics, March 2011.Stand Genomic Sci2012
23409217The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness.Stand Genomic Sci2012
22768370Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012.Stand Genomic Sci2012
21713030The Genomic Standards Consortium.PLoS Biol2011
21624155The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside.J Biomed Semantics2011
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Collaborators

Co-authored papers 17
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Scripps Institution of Oceanography, University of California San Diego
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Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 10
European Bioinformatics Institute
Co-authored papers 9
Cambridge Institute for Medical Research, University of Cambridge
Co-authored papers 9
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National Cancer Institute
Co-authored papers 9
University of California
Co-authored papers 9
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 8
University of Maryland School of Medicine
Co-authored papers 8
Max Planck Institute for Marine Microbiology
Co-authored papers 8
Co-authored papers 8
Present address: Inscripta Inc.
Co-authored papers 8
The MITRE Corporation
Co-authored papers 7
European Bioinformatics Institute
Co-authored papers 7
University of Maryland School of Medicine, Institute for Genome Sciences
Co-authored papers 6
University of California
Co-authored papers 6
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Co-authored papers 6
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
Co-authored papers 6
University of Wurzburg
Co-authored papers 6
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Co-authored papers 5
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The Genome Center at Washington University, Washington University School of Medicine
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The Jackson Laboratory Cancer Center
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