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Author Details

Yin Shen
Wenzhou Medical University
2005
44
27
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37419111Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project.Mol Cell2023
37932307OIMHS: An Optical Coherence Tomography Image Dataset Based on Macular Hole Manual Segmentation.Sci Data2023
37152290Quantitative assessment of retinal microvascular remodeling in eyes that underwent idiopathic epiretinal membrane surgery.Front Cell Dev Biol2023
37318706Artificial Intelligence-Based Quantification of Central Macular Fluid Volume and VA Prediction for Diabetic Macular Edema Using OCT Images.Ophthalmol Ther2023
37425940Combinatorial transcription factor binding encodes cis-regulatory wiring of forebrain GABAergic neurogenesis.bioRxiv2023
37419111Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project.Mol Cell2023
37932307OIMHS: An Optical Coherence Tomography Image Dataset Based on Macular Hole Manual Segmentation.Sci Data2023
37425940Combinatorial transcription factor binding encodes cis-regulatory wiring of forebrain GABAergic neurogenesis.bioRxiv2023
37318706Artificial Intelligence-Based Quantification of Central Macular Fluid Volume and VA Prediction for Diabetic Macular Edema Using OCT Images.Ophthalmol Ther2023
37152290Quantitative assessment of retinal microvascular remodeling in eyes that underwent idiopathic epiretinal membrane surgery.Front Cell Dev Biol2023
36381608Dual genome-wide coding and lncRNA screens in neural induction of induced pluripotent stem cells.Cell Genom2022
35771494Coordinated Transcriptional and Catabolic Programs Support Iron-Dependent Adaptation to RAS-MAPK Pathway Inhibition in Pancreatic Cancer.Cancer Discov2022
35687692The risk variant rs11836367 contributes to breast cancer onset and metastasis by attenuating Wnt signaling via regulating <i>NTN4</i> expression.Sci Adv2022
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
36381608Dual genome-wide coding and lncRNA screens in neural induction of induced pluripotent stem cells.Cell Genom2022
35771494Coordinated Transcriptional and Catabolic Programs Support Iron-Dependent Adaptation to RAS-MAPK Pathway Inhibition in Pancreatic Cancer.Cancer Discov2022
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
35687692The risk variant rs11836367 contributes to breast cancer onset and metastasis by attenuating Wnt signaling via regulating <i>NTN4</i> expression.Sci Adv2022
32591778SMNN: batch effect correction for single-cell RNA-seq data via supervised mutual nearest neighbor detection.Brief Bioinform2021
33726789The C. elegans homolog of human panic-disorder risk gene TMEM132D orchestrates neuronal morphogenesis through the WAVE-regulatory complex.Mol Brain2021
33863876Deletion of CTCF sites in the SHH locus alters enhancer-promoter interactions and leads to acheiropodia.Nat Commun2021
32591778SMNN: batch effect correction for single-cell RNA-seq data via supervised mutual nearest neighbor detection.Brief Bioinform2021
33398137Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2021
34921112Transcriptional network orchestrating regional patterning of cortical progenitors.Proc Natl Acad Sci U S A2021
34616068An atlas of gene regulatory elements in adult mouse cerebrum.Nature2021
34563051HPRep: Quantifying Reproducibility in HiChIP and PLAC-Seq Datasets.Curr Issues Mol Biol2021
34524848Parallel characterization of cis-regulatory elements for multiple genes using CRISPRpath.Sci Adv2021
33863876Deletion of CTCF sites in the SHH locus alters enhancer-promoter interactions and leads to acheiropodia.Nat Commun2021
33726789The C. elegans homolog of human panic-disorder risk gene TMEM132D orchestrates neuronal morphogenesis through the WAVE-regulatory complex.Mol Brain2021
34921112Transcriptional network orchestrating regional patterning of cortical progenitors.Proc Natl Acad Sci U S A2021
34616068An atlas of gene regulatory elements in adult mouse cerebrum.Nature2021
34524848Parallel characterization of cis-regulatory elements for multiple genes using CRISPRpath.Sci Adv2021
34563051HPRep: Quantifying Reproducibility in HiChIP and PLAC-Seq Datasets.Curr Issues Mol Biol2021
33398137Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2021
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
31777938SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble.Nucleic Acids Res2020
33037424Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2020
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
33057195Cell-type-specific 3D epigenomes in the developing human cortex.Nature2020
31777938SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble.Nucleic Acids Res2020
33057195Cell-type-specific 3D epigenomes in the developing human cortex.Nature2020
33037424Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2020
30735499Proximal recolonization by self-renewing microglia re-establishes microglial homeostasis in the adult mouse brain.PLoS Biol2019
30735499Proximal recolonization by self-renewing microglia re-establishes microglial homeostasis in the adult mouse brain.PLoS Biol2019
31367015Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes.Nat Genet2019
31367015Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes.Nat Genet2019
29767704Gene regulation in the 3D genome.Hum Mol Genet2018
29767704Gene regulation in the 3D genome.Hum Mol Genet2018
28623666SOX2 regulates acinar cell development in the salivary gland.Elife2017
28417999A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells.Nat Methods2017
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Collaborators

Bing Ren
Center for Epigenomics, University of California San Diego
Co-authored papers 18
Diane E Dickel
Co-authored papers 7
Axel Visel
Co-authored papers 7
Joseph R Ecker
The Salk Institute for Biological Studies
Co-authored papers 7
Len A Pennacchio
Lawrence Berkeley National Laboratory
Co-authored papers 6
Bin Li
Co-authored papers 6
Brian A Williams
Co-authored papers 6
David U Gorkin
Center for Epigenomics, University of California San Diego
Co-authored papers 6
Ah Young Lee
Co-authored papers 5
Ming Hu
Co-authored papers 5
David McCleary
University of California at Berkeley
Co-authored papers 5
Lenka Maliskova
Co-authored papers 5
David M Gilbert
Co-authored papers 5
Yupeng He
Salk Institute for Biological Studies
Co-authored papers 5
Armen Abnousi
Co-authored papers 5
Ross C Hardison
Co-authored papers 4
Michael Snyder
Stanford University
Co-authored papers 4
Roderic Guig??
Barcelona Institute of Science and Technology
Co-authored papers 4
Ali Mortazavi
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Henry Amrhein
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Diane Trout
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Thomas R Gingeras
Stanley Institute for Cognitive Genomics
Co-authored papers 4
Samantha Kuan
University of California San Diego
Co-authored papers 4
Alexander Dobin
Co-authored papers 4
J Michael Cherry
Stanford University
Co-authored papers 4
Job Dekker
University of Massachusetts Chan Medical School
Co-authored papers 4
Rajinder Kaul
Altius Institute for Biomedical Sciences
Co-authored papers 4
Zhen Ye
Ludwig Institute for Cancer Research, University of California San Diego
Co-authored papers 4
Carrie A Davis
Stanford University
Co-authored papers 4
John A Stamatoyannopoulos
Altius Institute for Biomedical Sciences
Co-authored papers 4
Release 1.2