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Author Details

Paolo Ribeca
The James Hutton Institute
2006
37
15
PMIDPaper TitleJournal TitlePublished Year
37761891Allelic Entropy and Times until Loss or Fixation of Neutral Polymorphisms.Genes (Basel)2023
37710003Distinct monkeypox virus lineages co-circulating in humans before 2022.Nat Med2023
37774706A novel factor modulating X chromosome dosage compensation in Anopheles.Curr Biol2023
36748517Characterization of a P1-bacteriophage-like plasmid (phage-plasmid) harbouring <i>bla</i> <sub>CTX-M-15</sub> in <i>Salmonella enterica</i> serovar Typhi.Microb Genom2022
34259558Mutagenesis Mapping of RNA Structures within the Foot-and-Mouth Disease Virus Genome Reveals Functional Elements Localized in the Polymerase (3D<sup>pol</sup>)-Encoding Region.mSphere2021
33676404Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species.BMC Genomics2021
34260287Engineered Promoter-Switched Viruses Reveal the Role of Poxvirus Maturation Protein A26 as a Negative Regulator of Viral Spread.J Virol2021
31529539Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence.Plant J2020
31905219Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid.PLoS Pathog2020
33112913Correction: Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid.PLoS Pathog2020
33092085A Systematic Evaluation of High-Throughput Sequencing Approaches to Identify Low-Frequency Single Nucleotide Variants in Viral Populations.Viruses2020
32300201Full genome sequencing of archived wild type and vaccine rinderpest virus isolates prior to their destruction.Sci Rep2020
32197378Pervasive Differential Splicing in Marek's Disease Virus can Discriminate CVI-988 Vaccine Strain from RB-1B Very Virulent Strain in Chicken Embryonic Fibroblasts.Viruses2020
31107235Mass Die-Off of Saiga Antelopes, Kazakhstan, 2015.Emerg Infect Dis2019
30984187Bovine Derived <i>in vitro</i> Cultures Generate Heterogeneous Populations of Antigen Presenting Cells.Front Immunol2019
31092573Persistent Infection of African Buffalo (Syncerus caffer) with Foot-and-Mouth Disease Virus: Limited Viral Evolution and No Evidence of Antibody Neutralization Escape.J Virol2019
29693634Within-Host Recombination in the Foot-and-Mouth Disease Virus Genome.Viruses2018
30252177Differential gene regulation underlies variation in melanic plumage coloration in the dark-eyed junco (Junco hyemalis).Mol Ecol2018
30405691The Site Frequency/Dosage Spectrum of Autopolyploid Populations.Front Genet2018
28049418ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.BMC Genomics2017
29092041A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0).Gigascience2017
27131376CARGO: effective format-free compressed storage of genomic information.Nucleic Acids Res2016
27964752Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx.Genome Biol2016
27346392Genome sequence of the olive tree, Olea europaea.Gigascience2016
26094690Efficient Alignment of Illumina-Like High-Throughput Sequencing Reads with the GEnomic Multi-tool (GEM) Mapper.Curr Protoc Bioinformatics2015
26647970A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.Nat Commun2015
26451818Boosting the FM-Index on the GPU: Effective Techniques to Mitigate Random Memory Access.IEEE/ACM Trans Comput Biol Bioinform2015
24037378Transcriptome and genome sequencing uncovers functional variation in humans.Nature2013
22238572Evidence for transcript networks composed of chimeric RNAs in human cells.PLoS One2012
22962361Modelling and simulating generic RNA-Seq experiments with the flux simulator.Nucleic Acids Res2012
22955620Landscape of transcription in human cells.Nature2012
23103880The GEM mapper: fast, accurate and versatile alignment by filtration.Nat Methods2012
22276185Fast computation and applications of genome mappability.PLoS One2012
21504986Computational challenges of sequence classification in microbiomic data.Brief Bioinform2011
20519287A more precise characterization of chaperonin substrates.Bioinformatics2010
18845582Faster exact Markovian probability functions for motif occurrences: a DFA-only approach.Bioinformatics2008
16605553Topology of pseudoknotted homopolymers.Phys Rev E Stat Nonlin Soft Matter Phys2006
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Collaborators

Roderic Guig??
Barcelona Institute of Science and Technology
Co-authored papers 7
Tyler Alioto
Universitat de Barcelona (UB)
Co-authored papers 6
Marta Gut
Universitat de Barcelona (UB)
Co-authored papers 5
Emanuele Raineri
Barcelona Institute of Science and Technology (BIST)
Co-authored papers 5
Michael Sammeth
Co-authored papers 4
Ivo Gut
Spain Universitat de Barcelona (UB)
Co-authored papers 4
Toni Gabald??n
Catalan Institution for Research and Advanced Studies
Co-authored papers 3
Sophia Derdak
Medical University of Vienna
Co-authored papers 3
Sarah Djebali
Co-authored papers 3
Stylianos E Antonarakis
Co-authored papers 3
Marina Marcet-Houben
Institute for Research in Biomedicine (IRB)
Co-authored papers 2
Sylvain Foissac
Co-authored papers 2
Julien Lagarde
Co-authored papers 2
Tim Hubbard
Co-authored papers 2
Ian Bell
Co-authored papers 2
Jennifer Harrow
Co-authored papers 2
Jorg Drenkow
Co-authored papers 2
Tomas Marques-Bonet
University of California san francisco
Co-authored papers 2
Michael L Tress
Spanish National Cancer Research Centre (CNIO)
Co-authored papers 2
Alexandre Reymond
Co-authored papers 2
Jacqueline Chrast
Co-authored papers 2
Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 2
Thomas R Gingeras
Stanley Institute for Cognitive Genomics
Co-authored papers 2
Alexander Dobin
Co-authored papers 2
Pedro G Ferreira
Co-authored papers 2
Sergi Beltran
Hospital Universitari Vall d'Hebron
Co-authored papers 2
Carlos L??pez-Ot??n
Instituto Universitario de Oncologia, Universidad de Oviedo
Co-authored papers 2
Philipp Kapranov
Co-authored papers 2
V??ctor Quesada
Instituto Universitario de Oncologia, Universidad de Oviedo
Co-authored papers 2
Mark Gerstein
Yale University
Co-authored papers 1
Release 1.2