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Author Details

Ibrahim Numanagi??
University of Victoria
2012
23
10
PMIDPaper TitleJournal TitlePublished Year
36657977An efficient genotyper and star-allele caller for pharmacogenomics.Genome Res2023
37469403Computational pharmacogenotype extraction from clinical next-generation sequencing.Front Oncol2023
36631897Sequre: a high-performance framework for secure multiparty computation enables biomedical data sharing.Genome Biol2023
35134542CYP2C8, CYP2C9, and CYP2C19 Characterization Using Next-Generation Sequencing and Haplotype Analysis: A GeT-RM Collaborative Project.J Mol Diagn2022
35452844Analytical Validation of a Computational Method for Pharmacogenetic Genotyping from Clinical Whole Exome Sequencing.J Mol Diagn2022
35958356Sequre: a high-performance framework for rapid development of secure bioinformatics pipelines.IEEE Int Symp Parallel Distrib Process Workshops Phd Forum2022
35303886Fast characterization of segmental duplication structure in multiple genome assemblies.Algorithms Mol Biol2022
34282326A Python-based programming language for high-performance computational genomics.Nat Biotechnol2021
32938926Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets.Nat Commun2020
35775031Seq: A High-Performance Language for Bioinformatics.Proc ACM Program Lang2019
29267878Computational identification of micro-structural variations and their proteogenomic consequences in cancer.Bioinformatics2018
29888346Latent Variable Model for Aligning Barcoded Short-Reads Improves Downstream Analyses.Res Comput Mol Biol2018
30138581Statistical Binning for Barcoded Reads Improves Downstream Analyses.Cell Syst2018
30423092Fast characterization of segmental duplications in genome assemblies.Bioinformatics2018
29422526Optimal compressed representation of high throughput sequence data via light assembly.Nat Commun2018
29700301Publisher Correction: Optimal compressed representation of high throughput sequence data via light assembly.Nat Commun2018
29483503Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes.Nat Commun2018
28881988Discovery and genotyping of novel sequence insertions in many sequenced individuals.Bioinformatics2017
27776113Comparison of high-throughput sequencing data compression tools.Nat Methods2016
26072492Cypiripi: exact genotyping of CYP2D6 using high-throughput sequencing data.Bioinformatics2015
24130305ORMAN: optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms.Bioinformatics2014
25357237DeeZ: reference-based compression by local assembly.Nat Methods2014
23047557SCALCE: boosting sequence compression algorithms using locally consistent encoding.Bioinformatics2012
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Nilgun Donmez
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James K Bonfield
Wellcome Sanger Institute
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Haris Smajlovi??
University of Victoria
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Release 1.2